Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG

Basic information

species Zea mays
transcript GRMZM2G067476_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 3'ss of exon 3
-tccgacttgaaaacattgc-tactgtac--ataatttagtagtgtttcttgtattgtccaac------ccacggtgttt-cgctaaatcaatgctttgt--acatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG
 |   |  ||  |   || |  ||| |    | | || ||   | ||| || ||  |   ||       |  |  || || |  |   |||||  ||| |    ||| |||||||||| || ||||| |||||| |  |||| ||| |||| |||||||| |||||||| |||||||||||||||
gtttaatctgttacacttacacacttttttaaaacttcagctcttttttttttaaagaaaaatgctgttctgctatgcttgcaattgctcaattttttttttgtatggtgaagGAGGCCTATTCAACCCCCATCCTTGCACTTGATGTTCTTGCTGAGAGGCCTCCAGAAAAGAAGTTTGAATGG

upper sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G27250.3 (Glycine max), 3'ss of exon 3
----tccgacttgaaaacattgctactgtac-ataatttagtagtgttt-cttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG
     ||    ||        || |  |  |    |||||| |    |   || |  ||  ||||     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||| ||||  |||| |||||||| ||||||||||||||||||
ccatgccattctgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaactt---gtttcttattgtagtagt-ttttttccctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG

upper sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G05530.2 (Glycine max), 3'ss of exon 3
tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG----
      |   |    |||  | |||     ||||  ||    || |  | |||  || |     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||    
----gttaatatctgttggaattgttgtctatttttta----ttttatttttggtcagcaacttgtttcttattgtagtagt-tttttttcctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGGTAT

upper sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G05530.1 (Glycine max), 3'ss of exon 3
tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG
      |   |    |||  | |||     ||||  ||    || |  | |||  || |     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||
----gttaatatctgttggaattgttgtctatttttta----ttttatttttggtcagcaacttgtttcttattgtagtagt-tttttttcctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG

upper sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 3'ss of exon 3
tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttga-agGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG
                      |  ||||  |||| |  || ||  | | | ||   |      |  |||  ||||     ||  || | | ||||   |||||||||| |||||||| || || ||  | ||||| || || | |||||||||||||||||||||||| |||
--------------------gtttgacattttttatttatgatttgtttctcgtttcatgtgaagaattt--ctaatctcttgacttttgcctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCTCCAGAGAAGAAGTTTGAGTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18181378|gb|BM382588.1|BM382588
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18172871|gb|BM348259.1|BM348259
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18167113|gb|BM336952.1|BM336952
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|16926595|gb|BM079663.1|BM079663
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|15053687|gb|BI359232.1|BI359232
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|17932024|gb|BM268984.1|BM268984
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|31357834|gb|CD442191.1|CD442191
EST:     GTTCACCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|148973350|gb|EE024440.2|EE024440
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18163508|gb|BM333347.1|BM333347
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|60400336|gb|DN233143.1|DN233143
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18168234|gb|BM338074.1|BM338074
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18176005|gb|BM351115.1|BM351115
EST:     TGTTCCCACAAAGACAGCTCTTCAG                         GAGAGCAAACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACC
genomic: TGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAG-GCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACC
EST: gi|5108408|gb|AI740121.1|AI740121
EST:     GTTCACCAGCTATTATTACATACCGTGTTCCCCCAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|50331163|gb|CO526289.1|CO526289
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18649161|gb|BM497980.1|BM497980
EST:     GTTCACCAGCTATTATTACATACCGNGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|22819811|gb|BU499901.1|BU499901
EST:     GTTCACCAGCTATTATTACATACCGNGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|13381706|gb|BG458261.1|BG458261
EST:     GTTCACCAGCTATCATTACATGCCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18161892|gb|BM331731.1|BM331731
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|17929925|gb|BM266885.1|BM266885
EST:     GTTCACCAGCTATCATTACATGCCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18162749|gb|BM332588.1|BM332588
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18173671|gb|BM349059.1|BM349059
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|89249775|gb|DY621561.1|DY621561
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18176508|gb|BM351441.1|BM351441
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18172256|gb|BM347644.1|BM347644
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18173129|gb|BM348517.1|BM348517
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|78081514|gb|DV509926.1|DV509926
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|28985718|gb|CB350781.1|CB350781
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|78081882|gb|DV510294.1|DV510294
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCCCTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|16378806|gb|BI992621.1|BI992621
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|6742602|gb|AW313417.1|AW313417
EST:     CCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCNCTGGATATTCTCGCTGAGAGACCT
genomic: CCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18168815|gb|BM338655.1|BM338655
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18168659|gb|BM338499.1|BM338499
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|7135836|gb|AW498291.1|AW498291
EST:     GTTCACCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|78025862|gb|DV494249.1|DV494249
EST:     GTTCACCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTTTTCAG                         GAGGCATACTCAACTCCCATTTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18167604|gb|BM337444.1|BM337444
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|28986044|gb|CB350941.1|CB350941
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18174386|gb|BM349774.1|BM349774
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18164000|gb|BM333839.1|BM333839
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|50334314|gb|CO529440.1|CO529440
EST:     CGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCCCTGGATATTCTCGCTGAGAGACCT
genomic: CGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18170719|gb|BM340559.1|BM340559
EST:     GTTCACCAGCTATCATTGCATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|14244099|gb|BG841759.2|BG841759
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18174175|gb|BM349563.1|BM349563
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18171772|gb|BM341612.1|BM341612
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|78026101|gb|DV494488.1|DV494488
EST:     CCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: CCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18173140|gb|BM348528.1|BM348528
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18172051|gb|BM347439.1|BM347439
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|17931731|gb|BM268691.1|BM268691
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18162934|gb|BM332773.1|BM332773
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|17930674|gb|BM267634.1|BM267634
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|15053686|gb|BI359231.1|BI359231
EST:     AAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: AAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|17930017|gb|BM266977.1|BM266977
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|110524573|gb|EE028757.1|EE028757
EST:     GTTCCCCAGCTATCATTACATACCGTGTTCCCCCAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCCCTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18165958|gb|BM335797.1|BM335797
EST:     GTTCACCAGCTATCATTGCATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|37391749|gb|CF633118.1|CF633118
EST:     GTTCACCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTATTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18163404|gb|BM333243.1|BM333243
EST:     GTTCAGCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|148963283|gb|EE014273.2|EE014273
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|211489309|gb|FL450049.1|FL450049
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|32859855|gb|CD999536.1|CD999536
EST:     GTTCACCAGCTATTATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
EST: gi|18171008|gb|BM340848.1|BM340848
EST:     GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAG                         GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT
genomic: GTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 194

TGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 240

TGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 350

TGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 241

TGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACAGCTCTTCAGgtccccccca ... catgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG
                         cgctaaa  putative branch site (score: 241)
                            taaatcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - gaaaacat
- - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctt