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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactttttgttacaagtatttacatgatacttttttggctgatgatgtccagcaaggcctgcgtaaatgagaggatagattattttttcttgttttcagGACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGACTCGTCAGTGTATGTTTGTTCAAATAAAGGCGAGGATTTGGTTGCATCC

Basic information

species Zea mays
transcript GRMZM2G067096_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211089532|gb|FL476395.1|FL476395
EST:     CTGGCCAGGTCCGGATCACCTGCTCCAACCCCGTCCGTCCCAACTGAACC                         GACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGA
genomic: CTGGCCAGGTCCGGATCACCTGCTCCAACCCCGTCCGTCCCAACTGAACCgtacgtaacc ... ttgttttcagGACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGA
EST: gi|148999999|gb|EE037088.2|EE037088
EST:     CTGGCCAGGTCCGGATCACCTGCTCCAACCCCGTCCGTCCCAACTGAACC                         GACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGA
genomic: CTGGCCAGGTCCGGATCACCTGCTCCAACCCCGTCCGTCCCAACTGAACCgtacgtaacc ... ttgttttcagGACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGA
EST: gi|211330495|gb|FL186237.1|FL186237
EST:     CTGGCCAGGTCCGGATCACCTGCTCCAACCCCGTCCGCCCCAACTGAACC                         GACC-AGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGA
genomic: CTGGCCAGGTCCGGATCACCTGCTCCAACCCCGTCCGTCCCAACTGAACCgtacgtaacc ... ttgttttcagGACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtccagcaaggcctgcgtaaatgagaggatagattattttttcttgttttcagGACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGACTCGTCAGTGTATGTTTGTTCAAATAAAGGCGAGGATTTGGTTGCATCC
                                   ttattttttcttgttt  CT-rich tract
                              atagattattttttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atactttttgttacaagtatttacatgatacttttttggctgatgatgtccagcaaggcctgcgtaaatgagaggatagattattttttcttgttttcagGACCTAGGACTAGAGTTTGAAGGGAAAGGAGGCTTGATGCCCTTTTGATGACTCGTCAGTGTATGTTTGTTCAAATAAAGGCGAGGATTTGGTTGCATCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT