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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgagtctaaaacttttggactctagagtctcctgcagaatttttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT

Basic information

species Zea mays
transcript GRMZM2G066496_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066496_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g05650.1 (Oryza sativa), 3'ss of exon 4
tattgagtctaa-aacttttggactctagagtctcctgcagaatttttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT
||     | ||  |||| |    ||    |   |  |   |   |||    ||  | |  ||| | | || | |||  ||| | ||| ||  ||||||||| |||||||| |||||||| |||||||  || |||| ||||||||||||  | || |||||||| || ||||||||||||
taaaacatttagcaactatcatgcttcttatattgttttggtgatttggataatttcatgtctaatatta-tctttttccccctcttctgtctgtatctagGGGGCGCAAAGTTGAGGACCCTGACACATTGGAAAAGATACGGCTAACAGTTATTAACAACCTTCTGCAGTATCATCCT

upper sequence: GRMZM2G066496_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0147g00220.t01 (Vitis vinifera), 3'ss of exon 4
--------tattgagtctaaaacttttg---gactctagagtctcctgcagaatttttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT
         ||| |||  |  | |||        | |  | |||         ||||       || |    |||||  |  || |          ||   |||    |   || ||||| ||||| ||||||||||||||||| || || || || || ||||||||||||||  |  |||||||||| 
aatatttgcatt-agttaagtattttaatccagttgttcaatctttcctgtttttttgggtgttatcatcctttacaaaacaatgttga-------ttaatatgctagTGATGGACGCAAAGTTGAAGATCCTGACATGTTAGAGAGAATTCGACTTACAATCATCAACAACCTTTTGAAGTATCATCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT
             ttcttac  putative branch site (score: 2)
                         tatttccccctccctt  putative PPT
                ttacagtaatattt  TA-rich tract