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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgccaccctctcgctccgtcgtcgcactcgcaccctcctgaaaaagcactctcgccgattccgccgtgaatggaatcgagaagaaaccagaaaagaaaaaggtggagcctatgatcagtttccattccatgcttggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTCGCCTTGGCGTCATTCACCGAAGTTTCTTTCAACTG

Basic information

species Zea mays
transcript GRMZM2G066413_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066413_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g07730.1 (Oryza sativa), 3'ss of exon 3
gttcgccaccctctcgctccgtcgtcgcactcgcaccctcctgaaaaagcactctcgccgattccgccgtgaatggaatcgagaagaaaccagaaaagaaa----aaggtggagcctatgatcagtttccattccatgcttggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTCGCCTTGGCGTCATTCACCGAAGTTTCTTTCAACTG
                                                                 |  |   |   |||  ||  |   || |  ||   |     || || |     || | | ||   |||   || |||   |||||   ||||| || | |||||||||||| |||||||||||||| ||||||||||||||||| || || || ||| | |||||||||||
-----------------------------------------------------------------gtgggtgacacaattcagtgggttcctgtcaatcgattcagagatgaaattggtgctgaattcaaattt-gtgtttgaattgcagACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211269384|gb|FL189988.1|FL189988
EST:     CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAG                         GTTCCTTCCCTTCCGGTGCTGGGTTCGCTCGTGCCGATCGTTGGCGGCGTC
genomic: CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAGgttcgccacc ... tggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTC
EST: gi|67024608|gb|CO453357.1|CO453357
EST:     CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAG                         GTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTC
genomic: CCTCCGAGCCCTTCTTCACCGTCGTCCTCTCCGCCCTCTTCCTCGGCGAGgttcgccacc ... tggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaaagaaaaaggtggagcctatgatcagtttccattccatgcttggtatgcagGTTCCTTCCCTTCCGGTGCTGGGCTCGCTCGTGCCGATCGTTGGCGGCGTCGCCTTGGCGTCATTCACCGAAGTTTCTTTCAACTG
     agaaaaa  TA-rich tract