1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggtattcggcggcaaatgctcacgccttgtttcctttccaccgcaccatcggtgggtgctgcagccccgaagcgacggctggcaatgaatggcgatggcgttttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACGAGGGGGTGCGACCTGGGCAGAGCATGGCGTTAGGCACGGCGGCCGCGG
species | Zea mays |
transcript | GRMZM2G065214_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149000961|gb|EE038201.2|EE038201
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148990247|gb|EE031893.2|EE031893
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148952040|gb|EC897826.2|EC897826
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149094544|gb|EE180063.2|EE180063
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149080800|gb|EE169868.2|EE169868
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148936017|gb|EC880073.2|EC880073
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148962827|gb|EE013747.2|EE013747
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149206197|gb|ES701793.1|ES701793
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149112996|gb|EE191482.2|EE191482
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
gctgcagccccgaagcgacggctggcaatgaatggcgatggcgttttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACGAGGGGGTGCGACCTGGGCAGAGCATGGCGTTAGGCACGGCGGCCGCGG
aatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtattcggcggcaaatgctcacgccttgtttcctttccaccgcaccatcggtgggtgctgcagccccgaagcgacggctggcaatgaatggcgatggcgttttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACGAGGGGGTGCGACCTGGGCAGAGCATGGCGTTAGGCACGGCGGCCGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA