1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactattgccaaaactgattgcatgatagatgtcatatgcgtgaatggttgcacttaccttttctggttcaacaggtttcgctaaactagagtttcttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
species | Zea mays |
transcript | GRMZM2G065105_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAEST: gi|211162284|gb|FL231527.1|FL231527
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAEST: gi|60340573|gb|DN207546.1|DN207546
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAEST: gi|211162277|gb|FL231520.1|FL231520
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAGEST: gi|89246761|gb|DY618548.1|DY618548
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAG
EST: AGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCTTACGTTGCTCTAAAGAAACAGCAEST: gi|211357112|gb|FL231558.1|FL231558
genomic: AGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CA
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAEST: gi|211357114|gb|FL231560.1|FL231560
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAEST: gi|71761831|gb|DR959768.1|DR959768
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
EST: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAGCA
genomic: ATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATGgtactattgc ... ttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CA
cacttaccttttctggttcaacaggtttcgctaaactagagtttcttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
tttcttgttt CT-rich tract
taaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactattgccaaaactgattgcatgatagatgtcatatgcgtgaatggttgcacttaccttttctggttcaacaggtttcgctaaactagagtttcttgtttgcagATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA