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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtacagtatacattgatcaggttcttcttcagtctgatctccggcctacaacatggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG

Basic information

species Zea mays
transcript GRMZM2G065012_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065012_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 3'ss of exon 3
gtttgtacagtatacattgatcaggttcttcttcagtctgatctccggcctacaacatggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG
            ||  ||  |  |   ||  || | | |  | |  |||     |  || | ||  |  | |  ||    | |||||||||| |  ||  | ||||||||||||||||||| |||||||| ||||| || || | ||| ||||||||| || ||||||
-----------gtatgttcgt--gacactgatttatttt--tgtggggc-----atttgtatttgatgctgcaattgatatggtacattaaagcacatgccgatgtgcagCTGGTTTCTCTTGCACAAGCTGGGAATGAGATTAGTCAGGACACCCTTGCACATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283614|gb|DV023182.1|DV023182
EST:     CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAG                         CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
genomic: CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacag ... caatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
EST: gi|71333237|gb|DR803673.1|DR803673
EST:     CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAG                         CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
genomic: CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacag ... caatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
EST: gi|71769027|gb|DR966964.1|DR966964
EST:     CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAG                         CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA
genomic: CCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacag ... caatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcagCTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG
                      tatttgtacattaaa  TA-rich tract