1 5' 3' | 2 5' 3' | 3 5' 3' |
...cagcaatttcgattgtacagtgaataattcattgcaagttaataacacacatatgagcaacaaatacttttctgagattcagtggcatctcctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTCCCCTACTTCTGGGATGAGGACTGCTTGCCAGCACCAAAAGATGAACTC
species | Zea mays |
transcript | GRMZM2G064371_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|21809919|gb|BQ668237.1|BQ668237
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|20300649|gb|BQ163592.1|BQ163592
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
cacacatatgagcaacaaatacttttctgagattcagtggcatctcctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTCCCCTACTTCTGGGATGAGGACTGCTTGCCAGCACCAAAAGATGAACTC
tctcctgtt CT-rich tract
aaatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcaatttcgattgtacagtgaataattcattgcaagttaataacacacatatgagcaacaaatacttttctgagattcagtggcatctcctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTCCCCTACTTCTGGGATGAGGACTGCTTGCCAGCACCAAAAGATGAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaa