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gtgagtgttccgtttagcggtgtcgctttgtccttcaccggtttagggggctgtcgtgttgatattttttttcccctctgtgctgttcgtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCGCGTCCGATCTC
species | Zea mays |
transcript | GRMZM2G064023_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|71450120|gb|DR831170.1|DR831170
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|76284365|gb|DV023933.1|DV023933
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|149090362|gb|EE179668.2|EE179668
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|149082725|gb|EE171943.2|EE171943
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|67033527|gb|CO462276.1|CO462276
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|8103179|gb|AW927835.1|AW927835
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|149077813|gb|EE166538.2|EE166538
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCEST: gi|211399063|gb|FL099822.1|FL099822
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATG GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGGCTGCGATCCCGCATGgtgagtgttc ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
tagggggctgtcgtgttgatattttttttcccctctgtgctgttcgtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCGCGTCCGATCTC
tgttgat putative branch site (score: 4)
tgttgatatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttccgtttagcggtgtcgctttgtccttcaccggtttagggggctgtcgtgttgatattttttttcccctctgtgctgttcgtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGCGCGTCCGATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG