Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacatagtgtatatctaggtgcacagcaaaagctatgtacctaaaaagggcgaaacaaccaatatttgggataatccattggtggcatttggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA

Basic information

species Zea mays
transcript GRMZM2G063864_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 3'ss of exon 3
agacatagtgtatatctaggtgcacagcaaaagctatgtacctaaaaagggcgaaacaaccaatatttgggataatccattggtggcatttggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA
  |  |     ||||      |  ||     |   |   | | | |                | | |    ||| |||||   ||||||||| ||||||||||| |||||||||||||||||||    || |||||||| |||||||||||||||||  |||| ||||||||| | |||| | |||||||||||||||||
ttatctgagtaatattatccagtgcattgtcactcaacaatcaacattatattgtttggtagaaaatgacaatagtccataactggcatttgaatttcagGAGACGGCTCTTCACCATGATTAATGGTCTTCCCACTGTATATGAAGTTGTGACGGGAATTGCCAAGAAGCAAACAAAAGTCTCCAACGGCAGCAGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211089671|gb|FL143709.1|FL143709
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|5567021|gb|AI881932.1|AI881932
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211541755|gb|FL143681.1|FL143681
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACT
EST: gi|28909913|gb|CB331162.1|CB331162
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|148956927|gb|EC902857.2|EC902857
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|31360935|gb|CD445292.1|CD445292
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211541758|gb|FL143684.1|FL143684
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAA
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAA
EST: gi|148973532|gb|EE024632.2|EE024632
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|67015174|gb|CO443923.1|CO443923
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|31441001|gb|CD510432.1|CD510432
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGGTTATGAA
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAA
EST: gi|89246719|gb|DY618506.1|DY618506
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|32848625|gb|CD988306.1|CD988306
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGC
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211273111|gb|FL373250.1|FL373250
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTG
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTG
EST: gi|91056115|gb|EB166533.1|EB166533
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|30705614|gb|CD058845.1|CD058845
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|148943443|gb|EC888502.2|EC888502
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|22472296|gb|BU036776.1|BU036776
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTGGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|21432175|gb|BQ547665.1|BQ547665
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|28909531|gb|CB330977.1|CB330977
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|74233488|gb|DT641402.1|DT641402
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|37421141|gb|CF648268.1|CF648268
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211405597|gb|FL390184.1|FL390184
EST:     TCTGTTGCATTCTATTTTGTAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTG
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTG
EST: gi|148942470|gb|EC887488.2|EC887488
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211488746|gb|FL429925.1|FL429925
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTT
EST: gi|211260681|gb|FL463490.1|FL463490
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTT-GATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|26558205|gb|CA830440.1|CA830440
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|31441082|gb|CD510513.1|CD510513
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|26558541|gb|CA830776.1|CA830776
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|60356039|gb|DN223012.1|DN223012
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211089669|gb|FL143707.1|FL143707
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGGCCACTGTTTATGA
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGA
EST: gi|40335649|gb|CK369719.1|CK369719
EST:     CTGTTGCATTCTACTTTGGAGCTCGTTTTGGGATT-GACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGAT
genomic: CTGTTGCATTCTATTTTGGAGCTCGTTTTGG-ATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGAT
EST: gi|148943442|gb|EC888501.2|EC888501
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211426698|gb|FL073211.1|FL073211
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|22472098|gb|BU036578.1|BU036578
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|22133724|gb|BQ833869.1|BQ833869
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATCAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|76019815|gb|DT946985.1|DT946985
EST:     ATTTGGGAGCTCGTTTTGGATTGGACAAAGATCCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCCCTGTTTATGAAGTTGT
genomic: ATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211259581|gb|FL073575.1|FL073575
EST:     TTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|87156313|gb|DY401102.1|DY401102
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|60343509|gb|DN210482.1|DN210482
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|67022293|gb|CO451042.1|CO451042
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|78544955|gb|DV622453.1|DV622453
EST:     AGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: AGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|32920233|gb|CF025045.1|CF025045
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGACGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|20802891|gb|BQ293926.1|BQ293926
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|24768177|gb|CA403306.1|CA403306
EST:     CTG-TGCCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: CTGTTG-CATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211089667|gb|FL143705.1|FL143705
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211538741|gb|FL143670.1|FL143670
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211089668|gb|FL143706.1|FL143706
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211089672|gb|FL143710.1|FL143710
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTG
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTG
EST: gi|148963054|gb|EE014007.2|EE014007
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211087218|gb|FL143691.1|FL143691
EST:     CTGTTGCATTCTACTTTGGAGCTCGTTTTGGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: CTGTTGCATTCTATTTTGGAGCTCGTTTTGG-ATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|71757175|gb|DR955112.1|DR955112
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|32831789|gb|CD971467.1|CD971467
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|148966200|gb|EE017149.2|EE017149
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|76019816|gb|DT946986.1|DT946986
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|50337566|gb|CO532692.1|CO532692
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211087228|gb|FL143701.1|FL143701
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAG
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAG
EST: gi|23357493|gb|BU645142.1|BU645142
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211087231|gb|FL143704.1|FL143704
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|91874786|gb|EB404743.1|EB404743
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCCCCATGATTAACAACCTGCCCCACTGTTTATGAAGTTG
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCC-ACTGTTTATGAAGTTG
EST: gi|211538740|gb|FL143669.1|FL143669
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211448345|gb|FL416386.1|FL416386
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATT
EST: gi|213174383|gb|FM184210.1|FM184210
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211541760|gb|FL143686.1|FL143686
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|101395826|gb|EB819840.1|EB819840
EST:     CTGTTGCATTTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCCTGCCCACTGTTTATGAAGTTT
genomic: CTGTTGCATT-CTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACC-TGCCCACTGTTTATGAAGTT-
EST: gi|91867783|gb|EB399794.1|EB399794
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211087225|gb|FL143698.1|FL143698
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211538743|gb|FL143672.1|FL143672
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211541762|gb|FL143688.1|FL143688
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211089679|gb|FL143717.1|FL143717
EST:     CTGTTGCATTCTACTTTGGAGCTCGNTTTGGATTTGACAAAAGATGCCAG                         -AGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAA
genomic: CTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAA-GATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAA
EST: gi|21809488|gb|BQ667806.1|BQ667806
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|211087229|gb|FL143702.1|FL143702
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|21987379|gb|BQ778907.1|BQ778907
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|30087500|gb|CB885706.1|CB885706
EST:     TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
EST: gi|26456376|gb|CA827959.1|CA827959
EST:     TCTGTTGCATTCTACTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAG                         GAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT
genomic: TCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 665

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCATGGCTCCTGTCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 139

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCATGGCTCCTGTCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 214

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCATGGCTCCTGTCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 143

AAAAAGACTGGTTGTCTCTAGTTGCAGTTCATAGTGATGCATGGCTCCTGTCTGTTGCATTCTATTTTGGAGCTCGTTTTGGATTTGACAAAGATGCCAGgtttgtgttt ... tggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagggcgaaacaaccaatatttgggataatccattggtggcatttggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA
                aatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agacatagtgtatatctaggtgcacagcaaaagctatgtacctaaaaagggcgaaacaaccaatatttgggataatccattggtggcatttggatttcagGAGAAGGCTCTTCACCATGATTAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - ggtgcac
- - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - cctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggc