1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcctttggactactgaatttactattttgctgtttaaagcttgtagttttcgaattatctcaaatcattgaaaatttttgatttttttattactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGGAGCAGAGGTGGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACA
species | Zea mays |
transcript | GRMZM2G063355_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCGTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|33770858|gb|CF273152.1|CF273152
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211327140|gb|FL012759.1|FL012759
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211327148|gb|FL012767.1|FL012767
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211324977|gb|FL012746.1|FL012746
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211329311|gb|FL012773.1|FL012773
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTCTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211327149|gb|FL012768.1|FL012768
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211327147|gb|FL012766.1|FL012766
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|148971664|gb|EE022387.2|EE022387
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|26559206|gb|CA831441.1|CA831441
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|15208976|gb|BI430860.1|BI430860
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGAATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211329317|gb|FL012779.1|FL012779
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211324974|gb|FL012743.1|FL012743
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211324988|gb|FL012757.1|FL012757
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|50331765|gb|CO526891.1|CO526891
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211327141|gb|FL012760.1|FL012760
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|22542051|gb|BU092489.1|BU092489
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCTTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211327145|gb|FL012764.1|FL012764
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
agttttcgaattatctcaaatcattgaaaatttttgatttttttattactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGGAGCAGAGGTGGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACA
ttttgat putative branch site (score: 63)
tttttttattactccc CT-rich tract
aattatctcaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctttggactactgaatttactattttgctgtttaaagcttgtagttttcgaattatctcaaatcattgaaaatttttgatttttttattactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGGAGCAGAGGTGGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
tgccttt
- - - - - ctactga
- - - - - - - - - - - - - - tgctgtt