Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG

Basic information

species Zea mays
transcript GRMZM2G063340_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063340_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
-----agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG
        ||  || |  | |||| | | ||  | |||        | | |     | |   |     | || |  |||||      || |||   |  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
tcattgtccaccttcctttgttct-gtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaat----acatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG

upper sequence: GRMZM2G063340_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT2G32060.1 (Arabidopsis thaliana), 3'ss of exon 3
-agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG
   |  ||| |   |||| ||   | |   |  || | ||   ||  | |      ||||  |   | |   ||| |  || || ||  |     |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||  ||||  |||||
gtaagttgtcttcctttttta--tccttgaagctttctctcctctaaggaa----gactttgatggtaac--taataatcttcaatttgg-----ttgcagCTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG

upper sequence: GRMZM2G063340_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT1G15930.2 (Arabidopsis thaliana), 3'ss of exon 3
---------------------agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgccccc-ttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG
                       | |        |  | || | | |    |    || | |    | |   |||||  |     ||    ||  ||   |  |  | ||      |||||||| ||||||||||| |||||||| || || ||||||||||| || ||||| ||  | || ||||||
gtaagtctatgttttcctctttaatactgactcttcatatataccttattgtcgctcagtttatcctcctaaatgaatgtttgg-ttatcaatggcaaattgaatctttgatgttgttgcagCTCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAG

upper sequence: GRMZM2G063340_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ26130 (Selaginella moellendorffii), 3'ss of exon 2
agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG
                                      || |||   |  |     ||   |  |   ||| |||    | | |||       |||||||||||||||||| ||||| || ||||||||  | ||||| || |||||||||||||| ||  ||  |
-------------------------------------gtaagcttcccttttccttctccaagttctctca-aac--ttttcgctttgat---cttgcagCTTTGCAAGATCGACTCCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG

upper sequence: GRMZM2G063340_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ10812 (Selaginella moellendorffii), 3'ss of exon 2
agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG
                                      || |||   |  |     ||   |  |   ||| |||    | | |||       |||||||||||||||||| ||||| || ||||||||  | ||||| || |||||||||||||| ||  ||  |
-------------------------------------gtaagcttcccttttccttctccaagttctctca-aac--ttttcgctt---tgttcttgcagCTTTGCAAGATCGACTCCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14997252|gb|BI319257.1|BI319257
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60336720|gb|DN203693.1|DN203693
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|29945536|gb|CB815689.1|CB815689
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60351346|gb|DN218319.1|DN218319
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|15632498|gb|BI679591.1|BI679591
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|14717663|gb|BI245313.1|BI245313
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32825980|gb|CD965658.1|CD965658
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211029079|gb|FL132095.1|FL132095
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGRCTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTC-
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211026633|gb|FL132092.1|FL132092
EST:     TCACCTGGTGCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTSCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCKMGCTC
genomic: TCACCTGGT-CACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCT-GCTC
EST: gi|19770525|gb|BQ035246.1|BQ035246
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|21331801|gb|BQ487182.1|BQ487182
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60352038|gb|DN219011.1|DN219011
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACCCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211430168|gb|FL109543.1|FL109543
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTNCAAGATTGACTCTGAGGGCAANGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60396925|gb|DN229744.1|DN229744
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211432763|gb|FL109552.1|FL109552
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32826689|gb|CD966367.1|CD966367
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|31998121|gb|CD661935.1|CD661935
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|76294113|gb|DV033681.1|DV033681
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211419750|gb|FL109469.1|FL109469
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|87153459|gb|DY398248.1|DY398248
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|31910829|gb|CD651619.1|CD651619
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|71449126|gb|DR830176.1|DR830176
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211244101|gb|FL109410.1|FL109410
EST:     TTCACCTGGTCACTGTTCCTGNCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGWTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60357360|gb|DN224333.1|DN224333
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211049234|gb|FL320170.1|FL320170
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|28361837|gb|CB240193.1|CB240193
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|67033774|gb|CO462523.1|CO462523
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|9733442|gb|BE512299.1|BE512299
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|116828295|gb|EC856579.1|EC856579
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|14244243|gb|BG842257.2|BG842257
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32794117|gb|CD946353.1|CD946353
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211026632|gb|FL132091.1|FL132091
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|91876338|gb|EB406295.1|EB406295
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60356516|gb|DN223489.1|DN223489
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|71758647|gb|DR956584.1|DR956584
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|9461606|gb|BE453815.1|BE453815
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60357872|gb|DN224845.1|DN224845
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60340306|gb|DN207279.1|DN207279
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|20301310|gb|BQ164253.1|BQ164253
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211235155|gb|FL109352.1|FL109352
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAG-ATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTC
EST: gi|211029078|gb|FL132094.1|FL132094
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTG
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTG
EST: gi|22473012|gb|BU037492.1|BU037492
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|9794291|gb|BE552599.1|BE552599
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211437960|gb|FL109576.1|FL109576
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|20508196|gb|BQ279934.1|BQ279934
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|50330118|gb|CO525244.1|CO525244
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60347904|gb|DN214877.1|DN214877
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGACTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|9742695|gb|BE518843.1|BE518843
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|20508314|gb|BQ279980.1|BQ279980
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|101385674|gb|EB814885.1|EB814885
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32907115|gb|CF011928.1|CF011928
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60338000|gb|DN204973.1|DN204973
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|20300491|gb|BQ163434.1|BQ163434
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|91876339|gb|EB406296.1|EB406296
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211435371|gb|FL109569.1|FL109569
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|15312968|gb|BI478487.1|BI478487
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32827585|gb|CD967263.1|CD967263
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|20508312|gb|BQ279979.1|BQ279979
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|9742936|gb|BE519084.1|BE519084
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|28361649|gb|CB240005.1|CB240005
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60356409|gb|DN223382.1|DN223382
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|211250807|gb|FL109459.1|FL109459
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60357902|gb|DN224875.1|DN224875
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|89754361|gb|DY685151.1|DY685151
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60341800|gb|DN208773.1|DN208773
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|20508200|gb|BQ279935.1|BQ279935
EST:     TTCACCTGGTCACTGTTCCTGCCGCGAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32908804|gb|CF013617.1|CF013617
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|60347600|gb|DN214573.1|DN214573
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
EST: gi|32908635|gb|CF013448.1|CF013448
EST:     TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCTGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... ccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG
                       tcataac  putative branch site (score: 2)
                                          tgccccctt  putative PPT
                      atcataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT