1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgagcacggcctaaggatatataatctcttggagttgctttaaatgtcaagcctttacattttctttttagtcctttaagacatgtttcaattttctagAGCATGCCATTTTCCACTATGCTGTGCAGTATGAACTTGCACCTTGATCATAACAGCCTCCACTTATGCCCCCTTGCAGCTTTGCAAGATTGACTCTGAG
species | Zea mays |
transcript | GRMZM2G063340_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGG AGCATGCCATTTTCCACTATGCTGTGCAGTATGAACTTGCACCTTGATCAT
genomic: TTCACCTGGTCACTGTTCCTGCCGCTAAGACTCTTGGCGAGTGGGCCGGGgtgagttaag ... aattttctagAGCATGCCATTTTCCACTATGCTGTGCAGTATGAACTTGCACCTTGATCAT
tgtcaagcctttacattttctttttagtcctttaagacatgtttcaattttctagAGCATGCCATTTTCCACTATGCTGTGCAGTATGAACTTGCACCTTGATCATAACAGCCTCCACTTATGCCCCCTTGCAGCTTTGCAAGATTGACTCTGAG
ttttct CT-rich tract
tttacattttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgagcacggcctaaggatatataatctcttggagttgctttaaatgtcaagcctttacattttctttttagtcctttaagacatgtttcaattttctagAGCATGCCATTTTCCACTATGCTGTGCAGTATGAACTTGCACCTTGATCATAACAGCCTCCACTTATGCCCCCTTGCAGCTTTGCAAGATTGACTCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - gcacggc
- - - - - - - - - - - - - - - - -agttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttc