1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtacttcgtacctatctattcactttgattgtttcataagtcggaatgttcaaacctaaaatttatgtatcctttacacatccctttgcccaatattcgatgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA
species | Zea mays |
transcript | GRMZM2G062425_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|60350894|gb|DN217867.1|DN217867
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|60340981|gb|DN207954.1|DN207954
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|32916032|gb|CF020844.1|CF020844
genomic: GTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|60400550|gb|DN233357.1|DN233357
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|211409605|gb|FL451596.1|FL451596
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: TCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|149058791|gb|EE156812.2|EE156812
genomic: TCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|30087019|gb|CB885227.1|CB885227
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|4646952|gb|AI622027.1|AI622027
genomic: GTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: AGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|71768330|gb|DR966267.1|DR966267
genomic: AGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: CGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|60337208|gb|DN204181.1|DN204181
genomic: CGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|71760661|gb|DR958598.1|DR958598
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|91874149|gb|EB404106.1|EB404106
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|29544033|gb|CB604413.1|CB604413
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|60347033|gb|DN214006.1|DN214006
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|12968348|gb|BG265294.1|BG265294
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|71444605|gb|DR825655.1|DR825655
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|27576007|gb|CA998701.1|CA998701
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|20208345|gb|BQ134434.1|BQ134434
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|211448985|gb|FL452542.1|FL452542
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|76284272|gb|DV023840.1|DV023840
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|78073968|gb|DV502402.1|DV502402
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|50322938|gb|CO518064.1|CO518064
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: AGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|88752056|gb|DY536197.1|DY536197
genomic: AGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCTTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|78544379|gb|DV621877.1|DV621877
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|8516517|gb|BE123242.1|BE123242
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: TGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|71775282|gb|DR973160.1|DR973160
genomic: TGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|32916033|gb|CF020845.1|CF020845
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTTCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|27521916|gb|CA989022.1|CA989022
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACCCTGTTGGCCCTATATAEST: gi|30031764|gb|CB833615.1|CB833615
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: TCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|16927502|gb|BM080571.1|BM080571
genomic: TCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATAEST: gi|78118087|gb|DV536474.1|DV536474
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
EST: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC TGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
genomic: GAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCCgttagtactt ... atgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATA
cctaaaatttatgtatcctttacacatccctttgcccaatattcgatgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA
acctaaa putative branch site (score: 3)
aatttatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtacttcgtacctatctattcactttgattgtttcataagtcggaatgttcaaacctaaaatttatgtatcctttacacatccctttgcccaatattcgatgtgagcagTGCTTTTGAGCTTCCTGCCTCTCGGGTGATTCACACTGTTGGCCCTATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG