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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggagggagtagattattgttctcctgttatgttttaatgcttgtattgaaacctgtttccccaccttaatatacaattctaattctgcaccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGACGGCGCTAAAGCATCAAGTAGTCGATCTAGTCGTCGTTTCGGAAGC

Basic information

species Zea mays
transcript GRMZM2G062154_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062154_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g48370.1 (Oryza sativa), 3'ss of exon 3
cggagggagtagatta-ttgttctcctgttatgttttaatgcttgtattgaaacctgtttccccaccttaatatacaattctaattctgcacc-ctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGACGGCGCTAAAGCATCAAGTAGTCGATCTAGTCGTCGTTTCGGAAGC
  ||     | || |  |||     ||||| ||||||  ||||||||||| |   |  ||  |    ||  ||| || |  || |  ||  |  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| 
--gataatttggactggttgggtatctgttgtgttttcgtgcttgtattggatttttgttgtcttaatttttattcattggtattattgtgcttctgtttagATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78080829|gb|DV509241.1|DV509241
EST:     AGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAG                         ATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA
genomic: AGGACTTATCACAAGGGAGCAATTCATACATGGGAAAACTGAGgtgaggttca ... ccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaaacctgtttccccaccttaatatacaattctaattctgcaccctgtttagATCTGATTTCTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGACGGCGCTAAAGCATCAAGTAGTCGATCTAGTCGTCGTTTCGGAAGC
                                ttctaat  putative branch site (score: 2)
                                             ccctgttt  putative PPT
                     ttaatatacaattcta  TA-rich tract