1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccttgatgacttcagctgtcacacttttgtagcatgtttttcaatgtttattctgttgctgccgcaccaaacttgaatttctttttttttctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACTTAAAG
species | Zea mays |
transcript | GRMZM2G061783_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG GTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACEST: gi|60357389|gb|DN224362.1|DN224362
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
EST: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG GTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACEST: gi|60353651|gb|DN220624.1|DN220624
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
EST: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG GTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACEST: gi|211470031|gb|FL214428.1|FL214428
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
EST: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG GTGTACGGCAG
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAG
gtttattctgttgctgccgcaccaaacttgaatttctttttttttctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACTTAAAG
cttgaatttctttttt CT-rich tract
aaacttgaatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgatgacttcagctgtcacacttttgtagcatgtttttcaatgtttattctgttgctgccgcaccaaacttgaatttctttttttttctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACTTAAAG
- ttgatga
- - - - -cttcagc
- - - - - - - - - - - - - - - - catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcacc