1 5' 3' | 2 5' 3' | 3 5' 3' |
...aattctagagcttttatgttcttttatattttccagttccaattatactgtgaactttccatttgcttctttgtgttgtgactttgtgcccatctttcagAAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAATGGTGACAAACCCTTGCAATAGCTGTTCATCAATACTTGTATTTATTTTA
species | Zea mays |
transcript | GRMZM2G061732_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAATEST: gi|78544016|gb|DV621514.1|DV621514
genomic: ATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAAT
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTTTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAATEST: gi|113701149|gb|EE678653.1|EE678653
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAAT
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAAT
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAAT
tactgtgaactttccatttgcttctttgtgttgtgactttgtgcccatctttcagAAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAATGGTGACAAACCCTTGCAATAGCTGTTCATCAATACTTGTATTTATTTTA
cccatctttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattctagagcttttatgttcttttatattttccagttccaattatactgtgaactttccatttgcttctttgtgttgtgactttgtgcccatctttcagAAAACAAGGAGGTTACCCGACAAGCTTGTTCACCAGGTTGTAAATGGTAATGGTGACAAACCCTTGCAATAGCTGTTCATCAATACTTGTATTTATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - -tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg