1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaacaaaagtatcggtatccattaccctatgtaatccatttacgttacatttcggtgagccaaacaccaccatagacatttacttaaactacttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCCCAGATGCACCGGCACCTAT
species | Zea mays |
transcript | GRMZM2G061620_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|5296098|gb|AI782973.1|AI782973
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|211500819|gb|FL228128.1|FL228128
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|211500823|gb|FL228132.1|FL228132
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|76288772|gb|DV028340.1|DV028340
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|78114112|gb|DV532501.1|DV532501
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|211500820|gb|FL228129.1|FL228129
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|32915276|gb|CF020088.1|CF020088
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|4681058|gb|AI629728.1|AI629728
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCEST: gi|211500822|gb|FL228131.1|FL228131
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
EST: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG GCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
genomic: AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAGgtgagacgtt ... acttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCC
tacatttcggtgagccaaacaccaccatagacatttacttaaactacttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCCCAGATGCACCGGCACCTAT
ctactttt CT-rich tract
atttacttaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaaaagtatcggtatccattaccctatgtaatccatttacgttacatttcggtgagccaaacaccaccatagacatttacttaaactacttttgcagGCACCCTCTACTCAGACAGTGCCTGCTACTCCACCTCAAACGTCAGCAGCCCCAGATGCACCGGCACCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG