1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtagtaccatgacaacacatgcatatgcgtgcatgtaagatcatgcaatgcgacacttgacgacgcacgccgcgcgcggccatgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGGCGC
species | Zea mays |
transcript | GRMZM2G061101_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCG GAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGEST: gi|67018716|gb|CO447465.1|CO447465
genomic: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCGgtacgtagta ... atgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAG
EST: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCG GAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGEST: gi|110535476|gb|EE039642.1|EE039642
genomic: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCGgtacgtagta ... atgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAG
EST: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCG GAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGEST: gi|71433893|gb|DR814943.1|DR814943
genomic: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCGgtacgtagta ... atgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAG
EST: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCG GAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAG
genomic: AGAAGCTCCTCCACTGGTGGCAGCTGCACTACAGATGGCCCTATCCCTCGgtacgtagta ... atgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAG
aagatcatgcaatgcgacacttgacgacgcacgccgcgcgcggccatgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGGCGC
acttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtagtaccatgacaacacatgcatatgcgtgcatgtaagatcatgcaatgcgacacttgacgacgcacgccgcgcgcggccatgcatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG