1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcgagcattatggcttctttgatgcacttttgttgcagccatttccctttgcatgtgatctgaaatatgcttaccatccctacctttgttttctcatcagAATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTGAACTATCAGACGGAGATGAATTTCATTTCTATGACACAAGGCAAAGTTT
species | Zea mays |
transcript | GRMZM2G061099_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGGCTAGAGCTGTTCAAGCATGACTGCTCCAGCTCTGGAAAATGTAGTG AATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTGEST: gi|89249278|gb|DY621064.1|DY621064
genomic: ACGGCTAGAGCTGTTCAAGCATGACTGCTCCAGCTCTGGAAAATGTAGTGgtacttgttg ... ttctcatcagAATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTG
EST: ACGGCTAGAGCTGTTCAAGCATGACTGCTCCAGCTCTGGAAAATGTAGTG AATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTGEST: gi|87153161|gb|DY397950.1|DY397950
genomic: ACGGCTAGAGCTGTTCAAGCATGACTGCTCCAGCTCTGGAAAATGTAGTGgtacttgttg ... ttctcatcagAATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTG
EST: ACGGCTAGAGCTGTTCAAGCATGACTGCTCCAGCTCTGGAAAATGTAGTG AATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTG
genomic: ACGGCTAGAGCTGTTCAAGCATGACTGCTCCAGCTCTGGAAAATGTAGTGgtacttgttg ... ttctcatcagAATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTG
cctttgcatgtgatctgaaatatgcttaccatccctacctttgttttctcatcagAATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTGAACTATCAGACGGAGATGAATTTCATTTCTATGACACAAGGCAAAGTTT
tgcttac putative branch site (score: 87)
ccatccctacctttgt CT-rich tract
tgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgagcattatggcttctttgatgcacttttgttgcagccatttccctttgcatgtgatctgaaatatgcttaccatccctacctttgttttctcatcagAATATAGCAACACAGAATCTTCTGATGATGTTGGCAAGCAAGAGATTAGTGAACTATCAGACGGAGATGAATTTCATTTCTATGACACAAGGCAAAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - -ggcttct
- - - - - - - - - - gatgcac
- - - - - - - - - - - - - - - - -tgcagcc
- - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgctta