1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttgtctccacacacactgccgatgctgtctaaattatggctgacaattgtctactggagaggccaattctcatatctcttgtgaccttattctcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCTATACCAAGAAGTCTTAGTCTTCGAG
species | Zea mays |
transcript | GRMZM2G060896_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTGTACCAGGGGAAATCGCEST: gi|211227859|gb|FL287069.1|FL287069
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTGTACCAGGGGAAATCGCEST: gi|148991840|gb|EE033431.2|EE033431
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCEST: gi|211227858|gb|FL287068.1|FL287068
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGC-AGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTGTACCAGGGGAAATCGCEST: gi|211229916|gb|FL287072.1|FL287072
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTGTACCAGGGGAAATCGCEST: gi|71305271|gb|DR788769.1|DR788769
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCEST: gi|6918561|gb|AW400091.1|AW400091
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCEST: gi|211227857|gb|FL287067.1|FL287067
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAG-CAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTGTACCAGGGGAAATCGCEST: gi|148946476|gb|EC891786.2|EC891786
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCEST: gi|74240569|gb|DT648483.1|DT648483
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
EST: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG GAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
genomic: GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGgtacttgtct ... tcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGC
tgtctactggagaggccaattctcatatctcttgtgaccttattctcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCTATACCAAGAAGTCTTAGTCTTCGAG
ccttattctcttat CT-rich tract
ttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtctccacacacactgccgatgctgtctaaattatggctgacaattgtctactggagaggccaattctcatatctcttgtgaccttattctcttatgtagGAGAGGCCAATTCTTTGAAAGTGGAGAAGATCTTATACCAGGGGAAATCGCTATACCAAGAAGTCTTAGTCTTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT