1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgatacgtactgctcatggcgtacacgttgcttaccttctttaatctgttctcaaatgtgactgctgaatgtatgtacgtatatatatttgaaacttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGAGTCAGAGAAGAAAGCCTGGCTCATACTAGCATGGGTGAGCACGGTGGC
species | Zea mays |
transcript | GRMZM2G060742_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGTGGCCTCAAACGTTCCAACTG TTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGEST: gi|71773769|gb|DR971664.1|DR971664
genomic: AATGTGGCCTCAAACGTTCCAACTGgtacgatacg ... ttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
EST: CGCAGTCGTGATCCTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTG TTCTTTTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGEST: gi|5510792|gb|AI857176.1|AI857176
genomic: CGCAGTCGTGATCCTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTGgtacgatacg ... ttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
EST: CGCAGTCGTGATCCTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTG TTCTTCTGCTGGGCCCAAGGGTGGCAGCGTCAGCAGGCCCAATCTCCCCAGEST: gi|149065589|gb|EE286712.2|EE286712
genomic: CGCAGTCGTGATCCTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTGgtacgatacg ... ttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
EST: CGTGATCCTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTG TTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGEST: gi|149001345|gb|EE038636.2|EE038636
genomic: CGTGATCCTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTGgtacgatacg ... ttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
EST: CTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTG TTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGEST: gi|149111494|gb|EE294997.2|EE294997
genomic: CTAGTCCTTTCAAATGTGGCCTCAAACGTTCCAACTGgtacgatacg ... ttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
EST: CTCAAACGTTCCAACTG TTCTTCTGCTGGCCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
genomic: CTCAAACGTTCCAACTGgtacgatacg ... ttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAG
ctcaaatgtgactgctgaatgtatgtacgtatatatatttgaaacttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGAGTCAGAGAAGAAAGCCTGGCTCATACTAGCATGGGTGAGCACGGTGGC
cttcctttc CT-rich tract
tatatatatttgaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatacgtactgctcatggcgtacacgttgcttaccttctttaatctgttctcaaatgtgactgctgaatgtatgtacgtatatatatttgaaacttcctttcagTTCTTCTGCTGGGCACAAGGGTGGCAGCGTCAGCAGGCACAATCTCCCCAGAGTCAGAGAAGAAAGCCTGGCTCATACTAGCATGGGTGAGCACGGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA