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gttaaaaactacatttgttttcctttaacatgttatgtgtttggatacatttttttattgcattactgtattcatttctctttgttttgtggtcgccaacagtactctttgtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCGGATTCACCAGAATCTGCAGACAGAGAGATCTCATTTTTCTTCGGAGAA
species | Zea mays |
transcript | GRMZM2G060464_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGGACCAACTGATGCAAAAAAG-CCAAAACCTCTCATC-AAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCEST: gi|211375642|gb|FL110760.1|FL110760
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCEST: gi|211477829|gb|FL110766.1|FL110766
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCEST: gi|50330122|gb|CO525248.1|CO525248
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCEST: gi|211477830|gb|FL110767.1|FL110767
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCEST: gi|211375638|gb|FL110756.1|FL110756
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: TGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATTCCAA-CAG CATTAGAGCAATGTGTGGGCTGGGACTCTGAGAAAAATTGCGTGCATEST: gi|211375643|gb|FL110761.1|FL110761
genomic: TGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCAT-CCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGG-ACTCTGAGAAAAATTGCGTGCAT
EST: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCEST: gi|60351869|gb|DN218842.1|DN218842
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
EST: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAG CATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
genomic: TTGATTGGACCAACTGATGCAAAAAAGGCCAAAACCTCTCATCCAAACAGgttaaaaact ... gtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTC
ctgtattcatttctctttgttttgtggtcgccaacagtactctttgtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCGGATTCACCAGAATCTGCAGACAGAGAGATCTCATTTTTCTTCGGAGAA
ctctttgtcatttc CT-rich tract
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaaaactacatttgttttcctttaacatgttatgtgtttggatacatttttttattgcattactgtattcatttctctttgttttgtggtcgccaacagtactctttgtcatttcagCATTAGAGCAATGTGTGGGCTGGACTCTGAGAAAAATTGCGTGCATGGTTCGGATTCACCAGAATCTGCAGACAGAGAGATCTCATTTTTCTTCGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA