1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttagctaactaactattagttctagtgcattcaaacaccccctaagcgtagaagcggtcaaactaaaagaatctctctcttgtatcctgtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAATGCAACAGTCATCATG
species | Zea mays |
transcript | GRMZM2G059191_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGGGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|71297722|gb|DR784813.1|DR784813
genomic: TCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|71763164|gb|DR961101.1|DR961101
genomic: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|71313358|gb|DR793225.1|DR793225
genomic: CAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: GGGGAGATTTTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|71436411|gb|DR817461.1|DR817461
genomic: GGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CCAACGATCAGGGGGAGA-TGTCAAAGGAGTTTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGAAGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|89248692|gb|DY620478.1|DY620478
genomic: CCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: GGAGTTTGCTCAAACTTCCTGT GTGAC-TGAAACCCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGEST: gi|13178509|gb|BG349767.1|BG349767
genomic: GGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAA-CCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAG
EST: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|71326435|gb|DR799900.1|DR799900
genomic: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: TGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|13178183|gb|BG349441.1|BG349441
genomic: TGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACEST: gi|13125967|gb|BG316642.1|BG316642
genomic: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCAC
EST: GATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|94479916|gb|EB708874.1|EB708874
genomic: GATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGAC-TGAAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGEST: gi|13315903|gb|BG410251.1|BG410251
genomic: CGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTG-AAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAG
EST: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|110219228|gb|EC901126.1|EC901126
genomic: CACCAACGATCAGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: AGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGT GTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
genomic: AGGGGGAGATTGTCAAAGGAGTCTGCTCAAACTTCCTGTgtcagttctc ... gtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGG
aagcgtagaagcggtcaaactaaaagaatctctctcttgtatcctgtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAATGCAACAGTCATCATG
aactaaa putative branch site (score: 108)
aaactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagctaactaactattagttctagtgcattcaaacaccccctaagcgtagaagcggtcaaactaaaagaatctctctcttgtatcctgtgcatgcagGTGACTTGAAACCTGGCGCCGATGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAATGCAACAGTCATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - -caccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa