1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagaatattatgtatgccttgaggtgatgtctgtgttacttgtcaattgtcataataataacagttatttgatttgtacatttgattgcccctgaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGACTAGATATGAAAGCTACGGCATTA
species | Zea mays |
transcript | GRMZM2G058745_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACG GTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGAEST: gi|149104506|gb|EE289955.2|EE289955
genomic: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACGgtaaaaaatt ... cctgaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
EST: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACG GTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGAEST: gi|148968085|gb|EE019415.2|EE019415
genomic: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACGgtaaaaaatt ... cctgaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
EST: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACG GTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
genomic: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACGgtaaaaaatt ... cctgaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
attgtcataataataacagttatttgatttgtacatttgattgcccctgaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGACTAGATATGAAAGCTACGGCATTA
ttgcccct CT-rich tract
ataataataacagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaatattatgtatgccttgaggtgatgtctgtgttacttgtcaattgtcataataataacagttatttgatttgtacatttgattgcccctgaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGACTAGATATGAAAGCTACGGCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG