1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggatcttcgattgtatttgatcaaactaggcctggttgcattgcataatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTTAGATTGATAAATGTAATA
species | Zea mays |
transcript | GRMZM2G058252_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|9733260|gb|BE512012.1|BE512012
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|18168539|gb|BM338379.1|BM338379
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|32940246|gb|CF045065.1|CF045065
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: ACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|91878488|gb|EB408445.1|EB408445
genomic: ACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|32932015|gb|CF036827.1|CF036827
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAATACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|32931595|gb|CF036407.1|CF036407
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|166552824|gb|EG234325.1|EG234325
genomic: GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTTCCGAGGCGTTCCAGEST: gi|6020407|gb|AW065335.1|AW065335
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCT-CCGAGGCGTTCCAG
EST: GAGTACATTGATGGTCAATTCTCTGNAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|113792024|gb|DW914178.1|DW914178
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|30052148|gb|AI065437.2|AI065437
genomic: GGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|9953187|gb|BE639770.1|BE639770
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTTCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|91878487|gb|EB408444.1|EB408444
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTTTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|91050967|gb|EB161385.1|EB161385
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: CTGGAAACCTGGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|15053713|gb|BI359258.1|BI359258
genomic: CTGGAAACCT-GGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|45847499|gb|CN071442.1|CN071442
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|211437155|gb|FL418511.1|FL418511
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|32939712|gb|CF044531.1|CF044531
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAEST: gi|15053712|gb|BI359257.1|BI359257
genomic: GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
taatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTTAGATTGATAAATGTAATA
tacttct CT-rich tract
tatgattagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatcttcgattgtatttgatcaaactaggcctggttgcattgcataatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTTAGATTGATAAATGTAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - -tgtattt
- - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - -attgcat
- - - - - - - - - - - - - - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcttg