Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaatagctaatcatctattgggtactgaatgacatacaaaattcattgctgcctcttttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG

Basic information

species Zea mays
transcript GRMZM2G058252_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g43620.1 (Oryza sativa), 3'ss of exon 3
gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaata-gctaatcatcta---ttgggtactgaatgacatacaaaattcatt-gctgcctctt-----ttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
                                    ||  || | | |    |   | || | |||  | | | ||||||   ||   ||   |   |||| | | ||||||| ||||    ||     | |   ||||||| | ||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| ||||| ||
------------------------------------gtattgttttgtgctttatttcagttaaattcgttcaccatctaccctttaatatgaatcaacatgccatattcatttgctgtaatttactcgtgtcccctactgctttcagCTGGCTAATACAGAGGAGTATATTGATGGACAATTCTCTGGAAACCTGGGAGAGATACTGATTAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g08090.2 (Oryza sativa), 3'ss of exon 4
gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaatagctaatcatctattgggtactgaatgacatacaaaattcatt-gctgc----ctcttttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
                                  |  |  |  ||||||   ||  | || | |||      |||| ||     ||  ||  ||| |   |  ||| || |||||      | |  || |||||||| | ||||| || || || |||||||| |||||||| ||||||||||||||| |||| ||||| ||||| ||
----------------------------------gtattattttgtattt--tgtatcagttaaat--tcgttcatttaccaa-tatggatcgacgtgtcatcttcttttgctgcaatttacctaattgtctactgctttcagCTGGCTAATACAGAGGAGTATATTGATGGGCAATTCTCTGGAAACTTGGGTGAGATACTGATAAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g08090.1 (Oryza sativa), 3'ss of exon 3
gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaatagctaatcatctattgggtactgaatgacatacaaaattcatt-gctgc----ctcttttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
                                  |  |  |  ||||||   ||  | || | |||      |||| ||     ||  ||  ||| |   |  ||| || |||||      | |  || |||||||| | ||||| || || || |||||||| |||||||| ||||||||||||||| |||                
----------------------------------gtattattttgtattt--tgtatcagttaaat--tcgttcatttaccaa-tatggatcgacgtgtcatcttcttttgctgcaatttacctaattgtctactgctttcagCTGGCTAATACAGAGGAGTATATTGATGGGCAATTCTCTGGAAACTTGG----------------

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA17G07060.1 (Glycine max), 3'ss of exon 3
gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaatagctaa-tcatctattgggtactgaatgacatacaaaattcattgctgcctctttt--ttttctactgcgt--gcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
                                                            ||  ||| |||| | |  | || |||       | | |      ||  | ||| |   | ||  |||| || |   |  | |||| |||||||| |||||||||||||| || |||||  |||||||  ||||||||||| | |||||
----------------------------------------------------------gtatatatatctaaattaatttttaggtgtctgggggc-tcttggcttagtcgctactaatattaattttttattatctttgtagCTGGCCAACACCGAGGAGTACATTGAGGGACAATTTACTGGAAATTTGGGAGAGATTTTAATCAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT2G14285.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------------gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagat---gaatagctaatcatctattgggtactgaatgacatacaaa------attcattgctgcc-------tcttttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
                            |  |   ||    | |   ||   |  || |  |    || ||| || ||      |      ||| | ||| || |  | |   |    |  || | | | |      ||||||||  | |       | ||   |   |  |   || |||| |  ||||| ||||| ||||||||||| |||||  | |||||||| ||||||||| |||||||
gtatggtcttagcttctatgttcaactcaagatcatgttcttgtcattgaagttttaaacagagattgatgttttcaaatttcaatgcttagaaaatctattcttagagtctatgtatagagatacatagatcgtttattcattgtagtcattgagattttccatgcttgttttttgtagCTAGGAAACACCGAGGAATACATTGATGGGCAATTGACAGGAAACCTTGGAGAGATTTTGATCAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s0220g00030.t01 (Vitis vinifera), 3'ss of exon 3
gtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaatagctaatcatctattgggtactgaatgacatacaaaattcattgctgcctcttttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
               ||||  | |  ||| | |  ||  |    |  |||           | | |   |    || || ||     ||       | || ||||||| |    || ||| |            |||||| ||||||| ||| || ||||||||||| || ||| |||||||||| ||||||||| |||||||
---------------tttgtttctgctaccaaactggctgctaagctttg-----------tcagtgtttgtgtatatactgatggttggtgatgtttcataattcatgggaatctttttct------------gcagCTGGCCAACAGTGAAGAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176423|gb|BM351382.1|BM351382
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211439749|gb|FL418521.1|FL418521
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211084505|gb|FL378043.1|FL378043
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|40336095|gb|CK370165.1|CK370165
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211311342|gb|FL401413.1|FL401413
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211450560|gb|FL421157.1|FL421157
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211500293|gb|FL429987.1|FL429987
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211401205|gb|FL425452.1|FL425452
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|32906951|gb|CF011764.1|CF011764
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211443716|gb|FL399729.1|FL399729
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|9733260|gb|BE512012.1|BE512012
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211104786|gb|FL388174.1|FL388174
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211445444|gb|FL381391.1|FL381391
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211443104|gb|FL373028.1|FL373028
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211024433|gb|FL373972.1|FL373972
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211437155|gb|FL418511.1|FL418511
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211302695|gb|FL370644.1|FL370644
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211045553|gb|FL403377.1|FL403377
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|18168539|gb|BM338379.1|BM338379
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|213182763|gb|FM187281.1|FM187281
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211303208|gb|FL395167.1|FL395167
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|76292086|gb|DV031654.1|DV031654
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|32932015|gb|CF036827.1|CF036827
EST:     GTACAAGGGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAATACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTACAAGGGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|91878488|gb|EB408445.1|EB408445
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211394994|gb|FL377436.1|FL377436
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211429137|gb|FL408427.1|FL408427
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|60347187|gb|DN214160.1|DN214160
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211436448|gb|FL384524.1|FL384524
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211278511|gb|FL371989.1|FL371989
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|9733261|gb|BE512013.1|BE512013
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211313369|gb|FL401428.1|FL401428
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211286499|gb|FL423658.1|FL423658
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211539230|gb|FL395839.1|FL395839
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|6020407|gb|AW065335.1|AW065335
EST:     GCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGNAAACCTGGGA
genomic: GCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|76292087|gb|DV031655.1|DV031655
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211542426|gb|FL402997.1|FL402997
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGSGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211309012|gb|FL381284.1|FL381284
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|32930046|gb|CF034858.1|CF034858
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|32908639|gb|CF013452.1|CF013452
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211092578|gb|FL396358.1|FL396358
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATNGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211539434|gb|FL405542.1|FL405542
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|30052148|gb|AI065437.2|AI065437
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|60359558|gb|DN226531.1|DN226531
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|18176857|gb|BM351790.1|BM351790
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|9953187|gb|BE639770.1|BE639770
EST:     GTTATCTTGCGTTCTGTGGACTCATATATGNAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGG
genomic: GTTATCTTGC-TTCTGTGGACTCATATATG-AATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGG
EST: gi|211514457|gb|FL429043.1|FL429043
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211334839|gb|FL416312.1|FL416312
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTSTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|15053713|gb|BI359258.1|BI359258
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211531121|gb|FL427366.1|FL427366
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|6956550|gb|AW428645.1|AW428645
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211197152|gb|FL410127.1|FL410127
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211530711|gb|FL414632.1|FL414632
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211521185|gb|FL395740.1|FL395740
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211154870|gb|FL390962.1|FL390962
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|91878487|gb|EB408444.1|EB408444
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTTTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|32909820|gb|CF014632.1|CF014632
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211092584|gb|FL396364.1|FL396364
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211431945|gb|FL418470.1|FL418470
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|45847499|gb|CN071442.1|CN071442
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|15053712|gb|BI359257.1|BI359257
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|22133617|gb|BQ833807.1|BQ833807
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 736

GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 364

GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 368

GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 317

GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactgaatgacatacaaaattcattgctgcctcttttttttctactgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG
                    ttcattgctgcctctt  CT-rich tract
            atacaaaattcatt  TA-rich tract