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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcgtcgcacgcgcgcagcaagatcgatcagatcgatggccataccatactcgccctttaatcaatcatgtgtaaagaatacgaataatatacagtactgtatatatacgacaatatattaattgctcaataatgtataggaatgtgttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGC

Basic information

species Zea mays
transcript GRMZM2G057963_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057963_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g32750.1 (Oryza sativa), 3'ss of exon 3
gtgatcgtcgcacgcgcgcagcaagatcgatcagatcgatggccataccatactcgccctttaatcaatcatgtgtaaagaatacgaataatatacagtactgtatatatacgacaatatattaattgctca-ataatgtataggaatgtgttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGC
                                                         ||   || |   ||||   |   || |  || || | | | |  | | |   | |       ||  |  ||||||  |   ||  |    | ||    ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| || | || 
-----------------------------------------------------agttccaagaaactgccatgcccaccaaaaaaaaagaaaaaaaacttttct-tgcttgcttggtggtagca--tgctcatgtggcgtcca----tctgcatatgcagGGTGGATGGGAGGACGACGAGAGCATCGGCGAAGCTGCCTGCAGAGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCGTTCTAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233575|gb|DT641489.1|DT641489
EST:     AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAG                         GGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC
genomic: AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAGgtgatcgtcg ... gttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC
EST: gi|78075588|gb|DV504022.1|DV504022
EST:     AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAG                         GGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC
genomic: AAGTGCTCATGATCTCGACGCCCAAGCGGAGCGATCTCATCTTCCCAAAGgtgatcgtcg ... gttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatacgacaatatattaattgctcaataatgtataggaatgtgttgctgcagGGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGC
               tattaat  putative branch site (score: 2)
           aatatattaattgctc  TA-rich tract