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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgttatcctttattttagtgatctttctctgattttgactaatgcaatttttttattctgtcattttactgttagtaacctttatttttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG

Basic information

species Zea mays
transcript GRMZM2G057853_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057853_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g43250.1 (Oryza sativa), 3'ss of exon 3
----atgtgtt--atcctttattttagtgatctttctctgattttgactaatgcaatttttttattctgtcattttactgttagtaacctttatttttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG
     ||| |   | | ||| | || ||| ||    | |||| |    |  ||    |   | ||||  |  |  ||    ||||||| | | ||  |||  | |||||||||||||||||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||||
gtctgtgtatcgaaacttttgtattggtg-tccacatatgatatg---ttgtgtgtgtacctcattcgttggtagta--agtagtaacttctgttggtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211528448|gb|FL327575.1|FL327575
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211094476|gb|FL367309.1|FL367309
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|148953595|gb|EC898949.2|EC898949
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211023880|gb|FL345724.1|FL345724
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211131766|gb|FL358659.1|FL358659
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|148930898|gb|EC873352.2|EC873352
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211391014|gb|FL322565.1|FL322565
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|71773953|gb|DR971841.1|DR971841
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211220147|gb|FL315336.1|FL315336
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCA
EST: gi|211190593|gb|FL324677.1|FL324677
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGT
EST: gi|93012339|gb|EB637859.1|EB637859
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211522295|gb|FL320503.1|FL320503
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211120948|gb|FL412614.1|FL412614
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTG
EST: gi|71435208|gb|DR816258.1|DR816258
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|76294071|gb|DV033639.1|DV033639
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|93284260|gb|EB676524.1|EB676524
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211144838|gb|FL418214.1|FL418214
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTG
EST: gi|211260370|gb|FL340609.1|FL340609
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|78080510|gb|DV508922.1|DV508922
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211400243|gb|FL372546.1|FL372546
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211081650|gb|FL369926.1|FL369926
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTT
EST: gi|211367713|gb|FL344720.1|FL344720
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGG
EST: gi|211541357|gb|FL357728.1|FL357728
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGAATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTC
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGA-TGGCCAAGTCAAGGTCTACGAGCTCTTGGATTC
EST: gi|50328005|gb|CO523131.1|CO523131
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211530008|gb|FL385889.1|FL385889
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211270383|gb|FL351867.1|FL351867
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211449141|gb|FL349636.1|FL349636
EST:     CTCATATACTAAATGTACATTTTGGATT-CATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|78124130|gb|DV542514.1|DV542514
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAGGGTCTAAGAGCTCTT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTT
EST: gi|211428743|gb|FL388354.1|FL388354
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATG
EST: gi|211304539|gb|FL359139.1|FL359139
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211067531|gb|FL351655.1|FL351655
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|76909537|gb|DV163411.1|DV163411
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211136424|gb|FL362108.1|FL362108
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|71772782|gb|DR970707.1|DR970707
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|89252106|gb|DY623892.1|DY623892
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|71444110|gb|DR825160.1|DR825160
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211174980|gb|FL426218.1|FL426218
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211112341|gb|FL330334.1|FL330334
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211332970|gb|FL315997.1|FL315997
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211287063|gb|FL337505.1|FL337505
EST:     CTCATATACTAAATGTACATTTTGGATKACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTT
EST: gi|211442017|gb|FL419343.1|FL419343
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTTGGATTC
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTT-GGATTC
EST: gi|211492174|gb|FL337344.1|FL337344
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211445204|gb|FL371169.1|FL371169
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211471788|gb|FL411612.1|FL411612
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGG
EST: gi|211314737|gb|FL360956.1|FL360956
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGC
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGC
EST: gi|211541447|gb|FL362041.1|FL362041
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|89248079|gb|DY619865.1|DY619865
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211270380|gb|FL351864.1|FL351864
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTC
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTC
EST: gi|211093131|gb|FL308875.1|FL308875
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGC-AAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|149107564|gb|EE189447.2|EE189447
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|148981980|gb|EE028040.2|EE028040
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211345408|gb|FL361388.1|FL361388
EST:     CTCATATACTAGATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGA
EST: gi|211542542|gb|FL409070.1|FL409070
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCYGAAAATG                         GTTACTGCATACTCAGAT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGAT
EST: gi|211080961|gb|FL340062.1|FL340062
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGAT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGAT
EST: gi|211223755|gb|FL402213.1|FL402213
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTC
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTC
EST: gi|211080710|gb|FL326336.1|FL326336
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211213572|gb|FL344284.1|FL344284
EST:     CATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAAATTG                         GTTACTGCATACTCAGATGGCCAAGTC
genomic: CATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAA-T-Ggtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTC
EST: gi|71439594|gb|DR820644.1|DR820644
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211089234|gb|FL353067.1|FL353067
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211425297|gb|FL350056.1|FL350056
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211085856|gb|FL313547.1|FL313547
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211516770|gb|FL314348.1|FL314348
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGC
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGC
EST: gi|211211312|gb|FL358293.1|FL358293
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211457947|gb|FL348753.1|FL348753
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGA
EST: gi|211056828|gb|FL382505.1|FL382505
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGT
EST: gi|211224412|gb|FL320291.1|FL320291
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|76937482|gb|DV175165.1|DV175165
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211046369|gb|FL322285.1|FL322285
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCT
EST: gi|71444109|gb|DR825159.1|DR825159
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATT
EST: gi|149074196|gb|EE162559.2|EE162559
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|76286893|gb|DV026461.1|DV026461
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|9731165|gb|BE509917.1|BE509917
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211127312|gb|FL389010.1|FL389010
EST:     CTCATATACTAAATGTACATTTYGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGAT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGAT
EST: gi|211040997|gb|FL343134.1|FL343134
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211021367|gb|FL343614.1|FL343614
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGG
EST: gi|211333713|gb|FL357946.1|FL357946
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTG
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTG
EST: gi|211305785|gb|FL318621.1|FL318621
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGT
EST: gi|211158079|gb|FL391002.1|FL391002
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCT
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCT
EST: gi|211176635|gb|FL423180.1|FL423180
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGARCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211457939|gb|FL348745.1|FL348745
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211255182|gb|FL327776.1|FL327776
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|50331370|gb|CO526496.1|CO526496
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|71429468|gb|DR810518.1|DR810518
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|91051936|gb|EB162354.1|EB162354
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
EST: gi|211503960|gb|FL378774.1|FL378774
EST:     CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATG                         GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA
genomic: CTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 133

TGATCAACTTCCAACCTGGAGAAATTGTAAAATCTTCGAGGATGGCAACTCTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 53

TGATCAACTTCCAACCTGGAGAAATTGTAAAATCTTCGAGGATGGCAACTCTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 57

TGATCAACTTCCAACCTGGAGAAATTGTAAAATCTTCGAGGATGGCAACTCTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 54

TGATCAACTTCCAACCTGGAGAAATTGTAAAATCTTCGAGGATGGCAACTCTCATATACTAAATGTACATTTTGGATTACATCTGGGAATTCTGAAAATGgtgggttatg ... ttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaatttttttattctgtcattttactgttagtaacctttatttttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG
                              tagtaac  putative branch site (score: 54)
                                    cctttatttttctgt  CT-rich tract
     tttttttattctgtca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgtgttatcctttattttagtgatctttctctgattttgactaatgcaatttttttattctgtcattttactgttagtaacctttatttttctgtatagGTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - -ctgattt
- - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttactg