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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactcttgctctttttcccgctaacatcagttgcttatgtgaatgcaaccatgagggcttgagcttgtgtgtttgtattactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTCAAAATCAATGCGGGTCAACTGCATCAACTGCTGTACTTGTTGGTGATCG

Basic information

species Zea mays
transcript GRMZM2G056572_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056572_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g56450.2 (Oryza sativa), 3'ss of exon 3
gtatactcttgctctttttcccgctaacatcagttgc----ttatgtgaatgcaaccatgagggcttgagcttgtgtgtttgtattactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTCAAAATCAATGCGGGTCAACTGCATCAACTGCTGTACTTGTTGGTGATCG
||||    ||| ||| |||||      ||  || ||     || |||| ||  ||     ||  ||  | |  |||   |||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||| ||
gtattggtttgttctctttccataattcactagatgttgagttttgtgtatagaattgacagaact--accacgtgatattgt-ttgctgtagATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558429|gb|CA830664.1|CA830664
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|76917080|gb|DV166669.1|DV166669
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|5846990|gb|AW000069.1|AW000069
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|76288715|gb|DV028283.1|DV028283
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|60351289|gb|DN218262.1|DN218262
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|31406344|gb|CD485076.1|CD485076
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|101386844|gb|EB815439.1|EB815439
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|211062962|gb|FL387714.1|FL387714
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|149106821|gb|EE188718.2|EE188718
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|71448387|gb|DR829437.1|DR829437
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|18660188|gb|BM500731.1|BM500731
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|5296366|gb|AI783136.1|AI783136
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|91051774|gb|EB162192.1|EB162192
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|149111016|gb|EE294515.2|EE294515
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|74237808|gb|DT645722.1|DT645722
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|37425087|gb|CF650279.1|CF650279
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|211187859|gb|FL425729.1|FL425729
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|60394530|gb|DN227400.1|DN227400
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|22133680|gb|BQ833845.1|BQ833845
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|211113689|gb|FL397728.1|FL397728
EST:     AATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGT
genomic: AATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTC-GCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGT
EST: gi|211209068|gb|FL368391.1|FL368391
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|211142820|gb|FL374557.1|FL374557
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|50323711|gb|CO518837.1|CO518837
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
EST: gi|76931265|gb|DV172687.1|DV172687
EST:     CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAG                         ATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC
genomic: CAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactctt ... attactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttatgtgaatgcaaccatgagggcttgagcttgtgtgtttgtattactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTCAAAATCAATGCGGGTCAACTGCATCAACTGCTGTACTTGTTGGTGATCG
                                        tttgtatta  TA-rich tract