1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttgctgctatgtctaccttgctcctatgcattttgttcaaccagctttgtgttattgttaaaacctactgtttacggccatcactctaccattcgatctcataatgtttccattttttgtggataatcatcctgccatgatcatgtcatatttctcaacactgttatttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTGACGAAATCAAGAACCACAAGTGGTTCAAGTCTGTAAACTGGAAGAGGC
species | Zea mays |
transcript | GRMZM2G056355_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|16925331|gb|BM078399.1|BM078399
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TANAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|211350193|gb|FL470898.1|FL470898
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGAAGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|5081127|gb|AI738173.1|AI738173
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCNCAAAGAAGCTGGCAGACGGCTGGGAAGCGGGCCAGGCGGCAGTEST: gi|211042390|gb|FL284657.1|FL284657
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: AGTGAAGTTCATTCAATGTTGAAAGGA TTCTTGAAGAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|5740692|gb|AI948382.1|AI948382
genomic: AGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|71444003|gb|DR825053.1|DR825053
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|211042389|gb|FL284656.1|FL284656
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAWGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|60348805|gb|DN215778.1|DN215778
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGAAGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|86466929|gb|DY233299.1|DY233299
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|148942871|gb|EC887913.2|EC887913
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATTTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|78107161|gb|DV525579.1|DV525579
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|86465903|gb|DY232276.1|DY232276
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|86470262|gb|DY236632.1|DY236632
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGA TTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
genomic: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCAATGTTGAAAGGAgtaagttgct ... tttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGT
gataatcatcctgccatgatcatgtcatatttctcaacactgttatttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTGACGAAATCAAGAACCACAAGTGGTTCAAGTCTGTAAACTGGAAGAGGC
tttatttc CT-rich tract
actgttatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgctgctatgtctaccttgctcctatgcattttgttcaaccagctttgtgttattgttaaaacctactgtttacggccatcactctaccattcgatctcataatgtttccattttttgtggataatcatcctgccatgatcatgtcatatttctcaacactgttatttatttcagTTATTGCACAAAGAAGCTGGCAGACGGCTGGGAAGCGGACCAGGCGGCAGTGACGAAATCAAGAACCACAAGTGGTTCAAGTCTGTAAACTGGAAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG