1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgatgcttttgtagcaacaagttggcgaaacgcaaccaacaaacaactgttgctgacctcgagtttgtcatatggatgtggtggtgaattcatttccagGACTACACGGCGAAGCTGTCGGATTTCGGGCTGGCGAAGGAGGGGCCGCAGGGGGACGCGACGCACGTGACGACGCGGGTGATGGGCACGCACGGGTACG
species | Zea mays |
transcript | GRMZM2G055982_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
aactgttgctgacctcgagtttgtcatatggatgtggtggtgaattcatttccagGACTACACGGCGAAGCTGTCGGATTTCGGGCTGGCGAAGGAGGGGCCGCAGGGGGACGCGACGCACGTGACGACGCGGGTGATGGGCACGCACGGGTACG
tgctgac putative branch site (score: 15)
ttcatttcc putative PPT
aattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgcttttgtagcaacaagttggcgaaacgcaaccaacaaacaactgttgctgacctcgagtttgtcatatggatgtggtggtgaattcatttccagGACTACACGGCGAAGCTGTCGGATTTCGGGCTGGCGAAGGAGGGGCCGCAGGGGGACGCGACGCACGTGACGACGCGGGTGATGGGCACGCACGGGTACG
-tgatgct
- - - - - - - -caacaag
- - - - - - - - - - - - - - -aacgcaa
- - - - - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtg