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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catagttctcatcgttactatagtttccatcaagaatttttccaagaattgtcaccatctatggctaattcttgctgatggatgttccaattgtcattagGTATCCTGCACACATAACCCTTCTGCGTGGAAATCATGAAAGTAGGCAGTTGACACAGGTATATTCTTGTATGTGAAAAACATTAATTCTGTACAGTTCA

Basic information

species Zea mays
transcript GRMZM2G055905_T06
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055905_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g49690.1 (Oryza sativa), 3'ss of exon 3
-catagttctcatcgttactatagtttccatcaagaatttttccaagaattgtcaccatctatggctaattcttgctgatggatgttccaattgtcattagGTATCCTGCACACATAACCCTTCTGCGTGGAAATCATGAAAGTAGGCAGTTGACACAGGTATATTCTTGTATGTGAAAAACATTAATTCTGTACAGTTCA
   | |  |||||  |  | |   ||   ||  | | ||| | |   | | || || |||| ||||| |||||||||  ||| | | |  ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||                                          
tggttgcactcattttctcaaggattctgatttatagtttgtacccaagt-gttactatctgtggctcattcttgctattgggtttcctgattgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAG------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211168521|gb|FL095724.1|FL095724
EST:     GGCTTCAACAGTCTGGAGGTTTTCACCATCCTATTGCTACTAAAAGCGAG                         GTATCCTGCACACATAACCCTTCTGCG
genomic: GGCTTCAACAGTCTGGAGGTTTTCACCATCCTGTTGCTACTAAAAGCGAGgtatttagtc ... ttgtcattagGTATCCTGCACACATAACCCTTCTGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgtcaccatctatggctaattcttgctgatggatgttccaattgtcattagGTATCCTGCACACATAACCCTTCTGCGTGGAAATCATGAAAGTAGGCAGTTGACACAGGTATATTCTTGTATGTGAAAAACATTAATTCTGTACAGTTCA
                           tgctgat  putative branch site (score: 3)
                    taattctt  TA-rich tract