1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggatgcaaataggttttgttaggcatgtggattagcttttccatgggattcggagtattttgacggcaacactcggtttttttttttgccccatccatagTAACGGATGACGAGGAGGCATACGACCTGCCTGCGTTCCAGGAGTTTACCTTCGAGCAGTTGCGGCTAGCTACATCAGGGTTTGCGGTGGAGAACATCGT
species | Zea mays |
transcript | GRMZM2G055561_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ggattcggagtattttgacggcaacactcggtttttttttttgccccatccatagTAACGGATGACGAGGAGGCATACGACCTGCCTGCGTTCCAGGAGTTTACCTTCGAGCAGTTGCGGCTAGCTACATCAGGGTTTGCGGTGGAGAACATCGT
ttttgac putative branch site (score: 78)
tttttttttttgcccc putative PPT
ttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgcaaataggttttgttaggcatgtggattagcttttccatgggattcggagtattttgacggcaacactcggtttttttttttgccccatccatagTAACGGATGACGAGGAGGCATACGACCTGCCTGCGTTCCAGGAGTTTACCTTCGAGCAGTTGCGGCTAGCTACATCAGGGTTTGCGGTGGAGAACATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
ggatgca
- - - - - - -ttttgtt
- - - - - - - - - - aggcatg
- - - - - - - - - - - - - - - - - - - -tccatgg