1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcttgttctctgttctcccctgagaaacaggaaaacaagattttttaggattcatcttagtatcgtacctaatatcattattaattgctattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG
species | Zea mays |
transcript | GRMZM2G055458_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGATGTATCAGATAACCAATGATGAAGACNNNNNNNGCACCAGAAATAA GTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTEST: gi|50337459|gb|CO532585.1|CO532585
genomic: GAGATGTATCAGATAACCAATGATGAAGACAAAAAAAGCACCAGAAATAAgtgaagtttt ... tattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
EST: GAGATGTATCAGATAACCAATGATGAAGACNNNNNNNGCACCAGAAATAA GTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTEST: gi|211049191|gb|FL204538.1|FL204538
genomic: GAGATGTATCAGATAACCAATGATGAAGACAAAAAAAGCACCAGAAATAAgtgaagtttt ... tattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
EST: GAGATGTATCAGATAACCAATGATGAAGACNNNNNNNGCACCAGAAATAA GTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTEST: gi|211049189|gb|FL204536.1|FL204536
genomic: GAGATGTATCAGATAACCAATGATGAAGACAAAAAAAGCACCAGAAATAAgtgaagtttt ... tattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
EST: GAGATGTATCAGATAACCAATGATGAAGACNNNNNNNGCACCAGAAATAA GTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTEST: gi|101387490|gb|EB815760.1|EB815760
genomic: GAGATGTATCAGATAACCAATGATGAAGACAAAAAAAGCACCAGAAATAAgtgaagtttt ... tattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
EST: GAGATGTATCAGATAACCAATGATGAAGAC-AAAAAAGCACCAGAAATAA GTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTEST: gi|211049192|gb|FL204539.1|FL204539
genomic: GAGATGTATCAGATAACCAATGATGAAGACAAAAAAAGCACCAGAAATAAgtgaagtttt ... tattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
EST: GAGATGTATCAGATAACCAATGATGAAGACNNNNNNNGCACCAGAAATAA GTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
genomic: GAGATGTATCAGATAACCAATGATGAAGACAAAAAAAGCACCAGAAATAAgtgaagtttt ... tattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGT
tttaggattcatcttagtatcgtacctaatatcattattaattgctattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG
tattaat putative branch site (score: 2)
taatatcattattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttgttctctgttctcccctgagaaacaggaaaacaagattttttaggattcatcttagtatcgtacctaatatcattattaattgctattatccagGTATGTTCCAGAAATAATTGAAGGGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG