1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttctacaacaatacttgtctcacagttacgcttatgcaatctactaagttccactatactctgagggggtgagctgatgatgtgtttcctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGAGCAAAACTGCACCAATCCAGGCAATTTCACTCATTATACTGGGCCCCT
species | Zea mays |
transcript | GRMZM2G055216_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|74233833|gb|DT641747.1|DT641747
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|78082074|gb|DV510486.1|DV510486
genomic: GCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCTTTTCAAAAGAAGTACAACATEST: gi|91872782|gb|EB402739.1|EB402739
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACAT
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|20803244|gb|BQ294294.1|BQ294294
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGTCTGTGTTCTGCACGTCGCTTCAACAGATT ACAATCGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|71439306|gb|DR820356.1|DR820356
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|26456709|gb|CA828292.1|CA828292
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GTTCATCTNGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|76282594|gb|DV022162.1|DV022162
genomic: GTTCATCT-GCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|149074480|gb|EE162876.2|EE162876
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGCGTCATTTGAGCTGCTGEST: gi|50337879|gb|CO533005.1|CO533005
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|87155665|gb|DY400454.1|DY400454
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|22935611|gb|BU571886.1|BU571886
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|26560089|gb|CA832324.1|CA832324
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|149008482|gb|EE040648.2|EE040648
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|78120872|gb|DV539256.1|DV539256
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|71436404|gb|DR817454.1|DR817454
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCA-CAGATT ACATTTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|71444649|gb|DR825699.1|DR825699
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|71446654|gb|DR827704.1|DR827704
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|148987586|gb|EE031452.2|EE031452
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|78113744|gb|DV532133.1|DV532133
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGEST: gi|71299090|gb|DR785540.1|DR785540
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
EST: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATT ACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
genomic: GGTTCATCTGCGCTTGCGTGGCAGTGTTCTGCACGTCGCTTCAACAGATTgtgagctctt ... ctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTG
ctaagttccactatactctgagggggtgagctgatgatgtgtttcctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGAGCAAAACTGCACCAATCCAGGCAATTTCACTCATTATACTGGGCCCCT
agctgat putative branch site (score: 124)
tgtgtttcctcttccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctacaacaatacttgtctcacagttacgcttatgcaatctactaagttccactatactctgagggggtgagctgatgatgtgtttcctcttcccagACAATTGGTTCCTTTCAAAAGAAGTACAACATTGGGTCATTTGAGCTGCTGAGCAAAACTGCACCAATCCAGGCAATTTCACTCATTATACTGGGCCCCT
- - - -caacaat
- - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt