1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatttttttcagaaccgtgtactgataagtgagcaggagcgtccaatcgcttttcattcatgctttcactagtcctgattttgtttcttctttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
species | Zea mays |
transcript | GRMZM2G055178_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTAAGACATGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAGEST: gi|33098908|gb|CF058868.1|CF058868
genomic: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
EST: TACTAAGACATGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAGEST: gi|78076916|gb|DV505350.1|DV505350
genomic: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
EST: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAGEST: gi|110965842|gb|EE185742.1|EE185742
genomic: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
EST: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAGEST: gi|5761852|gb|AI966825.1|AI966825
genomic: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
EST: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAGEST: gi|110520957|gb|EE025141.1|EE025141
genomic: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
EST: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAGEST: gi|71769336|gb|DR967273.1|DR967273
genomic: TACTAAGACTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
EST: CTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAG AATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
genomic: CTTGCATCTCCTGTCGAGGCGAAGGCCGCCTCATGTGCTTAGgtactaaacc ... tttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
atcgcttttcattcatgctttcactagtcctgattttgtttcttctttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
tcctgat putative branch site (score: 83)
tcctgattttgtttct CT-rich tract
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttttcagaaccgtgtactgataagtgagcaggagcgtccaatcgcttttcattcatgctttcactagtcctgattttgtttcttctttcctgcagAATGTGATGGAACAGGTGAGCCGAACATTGAACCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA