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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatttcctttttttttgtcattatggttgaaggatttgtatgttctcataatggaaatgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAACTTATCTCATGGTGATGAGCCAGCGGCATTTCCGTTTTTCTACATCAAA

Basic information

species Zea mays
transcript GRMZM2G055020_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055020_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g32060.1 (Oryza sativa), 3'ss of exon 2
----gtaagtatatttcctttttttttg--tcattatggttgaaggatttgtat----gttctcataatggaaatgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAACTTATCTCATGGTGATGAGCCAGCGGCATTTCCGTTTTTCTACATCAAA
    |||  | |||||  ||| || |    |  ||||| |  | |   |||||     | | || ||||||||   ||||||| ||| || | ||||| |||||||||||  ||||||||| ||| |||||||||||| ||||||| || || || || || ||||| || ||||||||||||
gtaagtagatgtattttgtttcttgtaagtttgttatgctaaatgatcttgtaccggcggtttcctaatggaagcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAACTTAGCTCATGGCGACGAACCTGCTGCGTTTCCCTTCTTCTACATCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443354|gb|DR824404.1|DR824404
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71761576|gb|DR959513.1|DR959513
EST:     CCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: CCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|32840194|gb|CD979875.1|CD979875
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAAT-GCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|74237664|gb|DT645578.1|DT645578
EST:     CAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: CAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149075926|gb|EE164487.2|EE164487
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|32840195|gb|CD979876.1|CD979876
EST:     AAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149094970|gb|EE180558.2|EE180558
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|76015780|gb|DT942950.1|DT942950
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71446890|gb|DR827940.1|DR827940
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGC-AAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|78120684|gb|DV539068.1|DV539068
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCCAAGATCGTAGAAGA                         GTATATATTAAT
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAAT
EST: gi|71440531|gb|DR821581.1|DR821581
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149077163|gb|EE165824.2|EE165824
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71769809|gb|DR967746.1|DR967746
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71763634|gb|DR961571.1|DR961571
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71428101|gb|DR809151.1|DR809151
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71449379|gb|DR830429.1|DR830429
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGTTAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|211218550|gb|FL110185.1|FL110185
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|71439617|gb|DR820667.1|DR820667
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|76015781|gb|DT942951.1|DT942951
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTG
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTG
EST: gi|91048418|gb|EB158836.1|EB158836
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
EST: gi|149103179|gb|EE288550.2|EE288550
EST:     AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGA                         GTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA
genomic: AGGCCTTGGGCTTTTGTCCAGTGGATCCAGAAAGCAAAGATCGTAGAAGAgtaagtatat ... atgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtcattatggttgaaggatttgtatgttctcataatggaaatgtttgcagGTATATATTAATGGCAGAGCCAGATCATGTCTTTGTGAAGCCTTTGCCAAACTTATCTCATGGTGATGAGCCAGCGGCATTTCCGTTTTTCTACATCAAA
                      atttgtat  TA-rich tract