1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acacagatcttgcaaaagtgtggtttgcccggactaggtgggtgtgtcctgtccaccttgtctcccttgattgactctgctctgcactgccttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCA
species | Zea mays |
transcript | GRMZM2G054634_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCAEST: gi|71760095|gb|DR958032.1|DR958032
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCAEST: gi|71330262|gb|DR801882.1|DR801882
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCAEST: gi|78122641|gb|DV541025.1|DV541025
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCAEST: gi|71426768|gb|DR807818.1|DR807818
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
EST: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACT GGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
genomic: TGTCGCCGAGTACATGCCCAACGACACCCTGTCCAAGCATCTCTTCCACTgtacgtgctc ... cttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCA
gtcctgtccaccttgtctcccttgattgactctgctctgcactgccttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCA
gattgac putative branch site (score: 3)
cactgccttttttc putative PPT
ttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacagatcttgcaaaagtgtggtttgcccggactaggtgggtgtgtcctgtccaccttgtctcccttgattgactctgctctgcactgccttttttcagGGGATAAGCAGCCGTTACCATGGGAAATGAGGCTGAGGGTTGCATATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG