1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatgttgttaaatgatgataatttttttttcatttataactctcttttggaactacttacataaataacattctctaaaactagagcctcttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT
species | Zea mays |
transcript | GRMZM2G054470_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|32934660|gb|CF039472.1|CF039472
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|93016995|gb|EB642515.1|EB642515
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|71318738|gb|DR796124.1|DR796124
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|74243203|gb|DT651117.1|DT651117
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|211073736|gb|FL043533.1|FL043533
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: CCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTTG GCTCTGCAAATTCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGEST: gi|32934536|gb|CF039348.1|CF039348
genomic: CCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCT-Ggtattttacc ... ttgtatgtagGCTCTGCAAAT-CCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAG
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
tttggaactacttacataaataacattctctaaaactagagcctcttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT
cctcttgt CT-rich tract
ttacataaataacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttgttaaatgatgataatttttttttcatttataactctcttttggaactacttacataaataacattctctaaaactagagcctcttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG