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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

Basic information

species Zea mays
transcript GRMZM2G054136_T08
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                        ||||  |     ||||    | |  || | | | |   || ||| |  |     | || || |     | || | | || || || | ||||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||| |||||||| |||||  | ||| |||| ||||| || ||||| |
------------------------gtaatatc----gtgaggcctctgatgtttcctaa---ttactgttacctagtcttaagatgttaacat-atctctctcctttttct-cagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
       ||   | | ||| ||   |    |     |||   | |||| |||   |      |   |||||     ||||      |     || | || | |||      |||||| ||||| |||||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
-------gtatggttttggctggaatcc-ttccacagtgcagtgtttcctgagaaacattgatcaatgattg---gcttattctccttttcttgttttgctactt------gcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttga---tccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
       ||   | | | | ||        |     |||     |||| |||   | | |||       ||||   ||  ||         |   |    | | | |     || ||||| ||||| || ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
-------gtatggtttttgctggaaccc-ttccatagtgcagagtttcctgaagttacctgagaaacattgatca-atgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G09330.1 (Glycine max), 3'ss of exon 1
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtg-tgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
       || ||||||||   ||   |||| ||    | |||| ||||   |||      |   |  |  || ||| |||   || | |       ||   || |     |   |||| || || || ||||||||||| ||||  ||||| |||||||| ||||| || ||||||||||| |||||  | ||  ||||  |||||| |||| |||
-------gt-atgctctgta-gatcaaaaccttcaaat-acttgtttcaatatct----tttgaggagcattgataattattgatcttgtcaactttaaaattatgctactaatagGAATTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgact-tatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgtt-ttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
       || ||| | ||   |  | |||  ||    |  |  | |   ||| |||   | | | | ||      || ||||  || ||  |    ||| |  ||||| |  || ||||||| || || ||||| ||||| ||||  ||||| |||||||| ||||| |||||||||||||| ||||| |||||  ||||||||||||| ||  |||
-------gt-atg-tttgttagctggaaatcttattatatcaatgtcagttgttcct--attttaggtggagctttaattaatgatctat-taacctatataactttgctactgaagGAGTTTAAAGGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 2
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgttt--ctttgtt-ttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
       || |||||| |   |  | |||  ||        |||| |||   ||  |  || ||  |  |     | | | ||||       | |  | | |  |||||    || ||||||| || || ||||| ||||| ||||  ||||| |||||||| ||||| ||||| |||||||| |||||  ||||  ||||||||||||| ||| |||
-------gt-atgctc-gttagctggaaatctta-------ttatatctgtgtctgttcctattttttgtggagcattaagaaatgatctattaacctctataactttgccactgaagGAGTTTAAAGGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgat-atgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
       || |||||||      | ||| |||    ||      |    |||      | |  |||||| || ||| |  |  || ||       | |||  ||| |      ||||| || ||||| ||||||||||| || |  || || |||||||| ||||| || ||||||||||| |||||  ||||| ||||||||||| | ||| |||
-------gt-atgctctttagctgctaaccttaaatgtc-----tcctctga------atttctgctgaatttataat-gattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgattt--catacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                   ||||  |    |||    ||  | | |  ||  | |     |||||    ||    |||||||| |  || | |||| | | ||    | ||| |||||| |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||
-------------------gtgaaatt--ttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattg-tgtg-tgttttgagctattt-gcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgat-atgtttctttgtt-ttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                 |       |  | |||        | || |  |||      |   | ||  |||||  |    |  ||   | | || | |||  |  ||||| |||||||||||||| || || || |||||||||| |||||| || || |||||||| |||||||||||||| |||||||||||| | || |||||||| ||| |||
-----------------gtacagattccatttttcttactttgatctaatgagtgtgaagattagc--atttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: AT4G31700.2 (Arabidopsis thaliana), 3'ss of exon 1
gtcagtggtgatgctctgggtgaggta-aactttggggtgacttatttcttgatccatgactcttgctgattt-catacttaaaaatataggtgtgatatgtttct---ttgtt----ttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                      ||||| |  ||     |  |||| ||  ||||| |       ||  ||||  |||    ||  | ||     || | ||||| |   |||||    |||||||||||||| || || || |||||||||| |||||| || || |||||||| |||||||||||||| |||||||||||| | || |||||||| ||| |||
----------------------aggtacagattccatttttcttactt--tgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                 |   |   | | | |||   ||    ||  |   || |     ||   ||   || |||    || || ||  | || | ||||| ||||| |  ||||| || || || ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||
-----------------gtaagcatttaccattgttatg--caatgccaaaattctactatcagactagatttatat---aacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatcca-tgactcttgctgatttcatacttaaaaatataggtgtgatatgtttc---tttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                                  |  ||| ||  ||  |  ||   | |   |  ||       |  |   ||  ||   | |||| | | |      |||||  |||||||||||||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| |||||  ||||  | || || || |  |||||||
----------------------------------gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttat-tgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                        |||  | ||    ||   |  | |    |   |  ||| |  || ||       |||  ||| |      | ||||   | || ||  |||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || || |||||||| |||||  ||||| |||| |||||| ||||| |||
------------------------gtatgccttttc-tgctcttctcccacttatttatctcatattgtttgatctactaatcatacaa----aacatgtca-tctgcttcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 3'ss of exon 2
------gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGG-TCGTGTTCGTCTTCTGC
      | |||||  ||   || ||     |  | ||||       | ||      || |     |||||   | | |    |||       |   |||| |  ||  |    || | |       |||| | |  | |    || |||  |||      ||| |||  ||       ||||    | | | | || ||||  | || ||   | || |  |
cagataggcagtg-cgagattcaggaatgcgccacctttatatacgcctagcatgggagct----ctcttatcggtcttcggctttgtttggtgcttgtgttcagTCGCCA-ATTCTACGA-----CAAGAGATTGGCCCAGGAGGTCAGCGGT------GACCAGCTGGGA-----GATGAGTTCAAGGGGTATGTCTTCAAGATCATGGGAGGCTGCGAC

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 3'ss of exon 3
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcag-
                                                                                           || |  || |     | || |    ||||||||||| || || |||||||| ||||| |||||||||||||| || ||||| |||||||| || || |||||    || ||||| |  || |||          
-------------------------------------------------------------------------------------------gtca-gtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaagCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                                                        ||| |    | |  ||    |||     | | | | | | ||      |||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| 
-------------------------------------------------------gtgaattcgtcggcatttgagctttgctgt-ttgttctaagat------ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

upper sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 3'ss of exon 2
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
                                                        ||| |    | |  ||    |||     | | | | | | ||      |||   ||||||| ||||| || |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||| | |   |    ||||| || || ||| 
-------------------------------------------------------gtgaattcgtcggcatttgagctttgctgt-ttgttctaagat------ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211199269|gb|FL277456.1|FL277456
EST:     GCGTGCCTTTTATGACCGAA-GATATCCCAGGAG                         GAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGC
genomic: GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGgtcagtggtg ... tgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGC
EST: gi|211199270|gb|FL277457.1|FL277457
EST:     GCGTGCCTTTTATGACCGAA-GATATCCCAGGAG                         GAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGATAAGCAAGGC
genomic: GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGgtcagtggtg ... tgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 34 (upstream exon), 49 (downstream exon)
Score: 947

GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGgtcagtggtg ... tgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC


Block sizes: 34 (upstream exon), 49 (downstream exon)
Score: 802

GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGgtcagtggtg ... tgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC


Block sizes: 34 (upstream exon), 49 (downstream exon)
Score: 969

GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGgtcagtggtg ... tgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC


Block sizes: 34 (upstream exon), 49 (downstream exon)
Score: 449

GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGgtcagtggtg ... tgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC
   tgctgat  putative branch site (score: 449)
                                     tgtttctttgtttt  putative PPT
      tgatttcatacttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG