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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggcaatttcctctccatacttctgcaactgagcatgtcctcttttttttcacacgtggcattgtgcaaaacataccaacatttgtcatcatcatttgtagGCATGCCAATAGCCACTTTGATGACGATCAACTCCAAAGGGACATCGAATTAGCACATCAGATAGCAGTTGCTGAATCAAGTACAGATACCATG

Basic information

species Zea mays
transcript GRMZM2G053676_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149076971|gb|EE165627.2|EE165627
EST:     TCATCCTGTCCCATCTGCAATATACAAGTTCTTACGGTTGAGCTGGAATG                         GCATGCCAATAGCCACTTTGATGACGATCAACTCCAAAGGGACATCGAATT
genomic: TCATCCTGTCCCATCTGCAATATACAAGTTCTTACGGTTGAGCTGGAATGgtaatggcaa ... tcatttgtagGCATGCCAATAGCCACTTTGATGACGATCAACTCCAAAGGGACATCGAATT
EST: gi|76016486|gb|DT943656.1|DT943656
EST:     TCATCCTGTCCCATCTGCAATATACAAGTTCTTACGGTTGAGCTGGAATG                         GCATGCCAATAGCCACTTTGATGACGATCAACTCCAAAGGGACATCGAATT
genomic: TCATCCTGTCCCATCTGCAATATACAAGTTCTTACGGTTGAGCTGGAATGgtaatggcaa ... tcatttgtagGCATGCCAATAGCCACTTTGATGACGATCAACTCCAAAGGGACATCGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacacgtggcattgtgcaaaacataccaacatttgtcatcatcatttgtagGCATGCCAATAGCCACTTTGATGACGATCAACTCCAAAGGGACATCGAATTAGCACATCAGATAGCAGTTGCTGAATCAAGTACAGATACCATG
                     aaaacata  TA-rich tract