Data associated with selected splice site

gttctttatgctttgttttaatgctgatgacctgtctgtcaatttagtacagatgcagTATATGATCGTCGACGGCGTTTCTAGCTCCTG

RNA-Seq data

 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 199

Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 133

Block sizes: 47 (upstream exon), 44 (downstream exon)
Score: 153

Block sizes: 42 (upstream exon), 41 (downstream exon)
Score: 109

ctttatgctttgttttaatgctgatgacctgtctgtcaatttagtacagatgcagTATATGATCGTCGACGGCGTTTCTAGCTCCTG

                  tgctgat  putative branch site (score: 109)
        tttgttttaat  TA-rich tract