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gtacgtaatcttttagtttgattcggtgaattcagaagtaggaattttttattgacattaatgcatgtctaccctctcaattttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
species | Zea mays |
transcript | GRMZM2G053531_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|211437854|gb|FL220477.1|FL220477
genomic: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|78109883|gb|DV528299.1|DV528299
genomic: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: TTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|60341680|gb|DN208653.1|DN208653
genomic: TTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: GATGGAAGCGGAACTTTACTCCCGATCATTG-TT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|60394174|gb|DN227044.1|DN227044
genomic: GATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: GCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|6227143|gb|AW155672.1|AW155672
genomic: GCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTAATGGCAGCTATTCGTAATGTCCACATTEST: gi|76926083|gb|DV170714.1|DV170714
genomic: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|93281145|gb|EB673409.1|EB673409
genomic: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTEST: gi|78021679|gb|DV490066.1|DV490066
genomic: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: CGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTAATGGCAGCTATTCGTAATGTCCACATTEST: gi|93016890|gb|EB642410.1|EB642410
genomic: CGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
EST: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTT TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
genomic: TGTTTTGAGGATTGAAGATGGAAGCGGAACTTTACTCCCGATCATTGTTTgtacgtaatc ... attttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
gaagtaggaattttttattgacattaatgcatgtctaccctctcaattttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
ccctctcaattttctc CT-rich tract
aattttttattgacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaatcttttagtttgattcggtgaattcagaagtaggaattttttattgacattaatgcatgtctaccctctcaattttctcagTGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT