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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgatattcccatttctttggattgaagtgcctttgtgagaatatgggatttccactagatgctaacatagagtccgaaatatgaaaattgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA

Basic information

species Zea mays
transcript GRMZM2G052880_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052880_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g25580.1 (Oryza sativa), 3'ss of exon 3
agtgatattcccatttctttggattgaagtgcctttgtgagaatatgggatttccactagatgcta---acatagagtccgaaatatgaaaattgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA
    | |||   |||| ||   ||    ||  |  |||     |    |  ||||| |||||||        || ||||  |  ||||  | || |||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||
--ctaaattgttatttgttgaaatatttgt-tcactgtatattttaaagccttccagtagatgcatcgtctgtaaagtctcacctatgctagttcttttgcagTGGTTGAAGATTTGTACAAACGGAGACAACCGTTGCCTTCACTAGATGCTATATATTTCATTCAACCAACTAAAGAAAA

upper sequence: GRMZM2G052880_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 3'ss of exon 3
agtgatattcccatttctttggattgaagtgcctttgtgagaatatgggatttccactagatgctaacatagagtccgaaatatgaaaattgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA
 |||| | |    | | |||| |   |      | |      |||||  | ||  | | |    |||| ||     || || || |  |||  | || |||||| |||||  ||| || ||| || |||||| | |||||| ||||||| ||||| |||||||| ||||||||||||||
-gtgagaatgaagtatttttgtacaaa-----ttctagttccatatgatacttt-atttgggaataacttaattgtcgtaagat-attatttctctgtagTGGTTGAAGACATATTTAGACGAAGACAACCACTTCCTTCAATGGATGCAATATACTTCATCCAGCCAACTAAAGAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211376580|gb|FL160476.1|FL160476
EST:     ATGTCATATGCATGTAAGATGGCAGATATTACANGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: ATGTCATATGCATGTAAGATGGCAGATATTACA-GAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371250|gb|FL160440.1|FL160440
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373914|gb|FL160460.1|FL160460
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371256|gb|FL160446.1|FL160446
EST:     TATGTCAAATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371258|gb|FL160448.1|FL160448
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGNGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211504197|gb|FL160497.1|FL160497
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373918|gb|FL160464.1|FL160464
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373920|gb|FL160466.1|FL160466
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|50336915|gb|CO532041.1|CO532041
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373917|gb|FL160463.1|FL160463
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371251|gb|FL160441.1|FL160441
EST:     ATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAAGGNGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: ATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAA-GGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501864|gb|FL160492.1|FL160492
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373908|gb|FL160454.1|FL160454
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376585|gb|FL160481.1|FL160481
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501859|gb|FL160487.1|FL160487
EST:     TATGNCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376576|gb|FL160472.1|FL160472
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376575|gb|FL160471.1|FL160471
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|76280654|gb|DV020222.1|DV020222
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501861|gb|FL160489.1|FL160489
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373910|gb|FL160456.1|FL160456
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGNGTTTCAT                         TGGCCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376571|gb|FL160467.1|FL160467
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371255|gb|FL160445.1|FL160445
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501867|gb|FL160495.1|FL160495
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376582|gb|FL160478.1|FL160478
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAANCATTGNCTTCACTGGATGGCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501856|gb|FL160484.1|FL160484
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373909|gb|FL160455.1|FL160455
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376572|gb|FL160468.1|FL160468
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501854|gb|FL160482.1|FL160482
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGNCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376574|gb|FL160470.1|FL160470
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGNTCGAAGATTTATATAAAACGGAGGCAACCATTGCCTTCNCTGGATGCC
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAA-CGGAGGCAACCATTGCCTTCACTGGATGCC
EST: gi|211504199|gb|FL160499.1|FL160499
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACNGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371253|gb|FL160443.1|FL160443
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501857|gb|FL160485.1|FL160485
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371261|gb|FL160451.1|FL160451
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501865|gb|FL160493.1|FL160493
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376578|gb|FL160474.1|FL160474
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373907|gb|FL160453.1|FL160453
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501860|gb|FL160488.1|FL160488
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373912|gb|FL160458.1|FL160458
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501858|gb|FL160486.1|FL160486
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376583|gb|FL160479.1|FL160479
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|93015686|gb|EB641206.1|EB641206
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371257|gb|FL160447.1|FL160447
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211501868|gb|FL160496.1|FL160496
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211371254|gb|FL160444.1|FL160444
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373911|gb|FL160457.1|FL160457
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTNCACTGGATGCC
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTT-CACTGGATGCC
EST: gi|211376577|gb|FL160473.1|FL160473
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211504198|gb|FL160498.1|FL160498
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211373915|gb|FL160461.1|FL160461
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|76294182|gb|DV033750.1|DV033750
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|74234513|gb|DT642427.1|DT642427
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376573|gb|FL160469.1|FL160469
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
EST: gi|211376584|gb|FL160480.1|FL160480
EST:     TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT                         TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA
genomic: TATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 120

GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 154

GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 207

GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 74

GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCATgtaagtgggt ... tgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggatttccactagatgctaacatagagtccgaaatatgaaaattgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA
                tgctaac  putative branch site (score: 74)
                                            ttgtttt  putative PPT
                                 aaatatgaaaattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtgatattcccatttctttggattgaagtgcctttgtgagaatatgggatttccactagatgctaacatagagtccgaaatatgaaaattgttttgcagTGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - -tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcta