Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaataaacttccaaaaactaaggattagatatttaatatgaccataaatttcactgtttgttctaactcttgtaactgatgtgggatttctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCTATATGTGTGGACATCACCGACAACGAATTGGCATACTTGGAATGTATCC

Basic information

species Zea mays
transcript GRMZM2G052713_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052713_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 3'ss of exon 3
-agtaataaacttccaaaaactaaggattagatatttaatatgaccataaatttcactgtttgttctaactcttgtaactgatgtgggatttctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCTATATGTGTGGACATCACCGACAACGAATTGGCATACTTGGAATGTATCC
   |   |   |    ||   | |  ||   |  | | | |  |   |    |  | ||    |    |   |         ||||  | || ||||||||||||| ||||| ||||||||||| ||| ||||||||||||| |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||
tgttgggagtatcatcaagtttcaaaatgttacttctgacagcagtctttggtata-tgggaatcagtatattcactttctttgtgataattttcatgcagTTCCGGACGCATAAAGTTATATACAGGCGATATGCAGGACTGTTTTTCTCAATGTGTGTGGATATCACTGACAATGAGTTGGCATACTTGGAATGCATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344147|gb|FL188317.1|FL188317
EST:     TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACMAACTTCGTCGAG                         TTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTYCTCT
genomic: TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctt ... tctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCT
EST: gi|211344138|gb|FL188308.1|FL188308
EST:     TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG                         TTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACNNNNNNNCTCT
genomic: TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctt ... tctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCT
EST: gi|211341749|gb|FL188299.1|FL188299
EST:     TGCATCGGCTCGTGATCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG                         TTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACNNNNNNNCTCT
genomic: TGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAGgtgggtgctt ... tctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaatttcactgtttgttctaactcttgtaactgatgtgggatttctcatgcagTTCCGCACGCACAAAGTTATATATAGGAGATATGCAGGACTTTTTTTCTCTATATGTGTGGACATCACCGACAACGAATTGGCATACTTGGAATGTATCC
                                           tttctcat  CT-rich tract