1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgaggaaagattaagccaccttagaacaggcaagcttctctttgttggccctctattctgaattctgaacttatttcttgggttgccactaatgtgcagGATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG
species | Zea mays |
transcript | GRMZM2G052479_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCGTGCTGTGCCGAAAGAGGGCGGACCTTCTCGCCGCGAAACAG GATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTTATTGGACCAGGTAGTEST: gi|211321654|gb|FL407918.1|FL407918
genomic: GTGCGTGCTGTGCCGAAAGAGGGCGGACCTTCTCGCCGCGAAACAGgttcctagct ... taatgtgcagGATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGT
EST: GTGCGTGCTGTGCCGAAAGAGGGCGGACCTTCTCGTCGCGAAACAG GATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTEST: gi|211373863|gb|FL386282.1|FL386282
genomic: GTGCGTGCTGTGCCGAAAGAGGGCGGACCTTCTCGCCGCGAAACAGgttcctagct ... taatgtgcagGATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGT
EST: GTGCGTGCTGTGCCGAAAGAGGGCGGACCTTCTCGTCGCGAAACAG GATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGT
genomic: GTGCGTGCTGTGCCGAAAGAGGGCGGACCTTCTCGCCGCGAAACAGgttcctagct ... taatgtgcagGATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGT
ttggccctctattctgaattctgaacttatttcttgggttgccactaatgtgcagGATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG
cactaat putative branch site (score: 47)
aacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaggaaagattaagccaccttagaacaggcaagcttctctttgttggccctctattctgaattctgaacttatttcttgggttgccactaatgtgcagGATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - -gccacct
- - - - - - - - - - - - - -caggcaa
- - - - - - - - - - - - - - - - - gcttctc
- - - - - - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgcca