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gttagctcaaacttccgaattctcaacttctttggcagttattttaacttttttatttgttgctgaggctgctatatttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG
species | Zea mays |
transcript | GRMZM2G052403_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTTCTTCTGCTCTG CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGGTGAGAGGCTAGEST: gi|211048842|gb|FL187602.1|FL187602
genomic: ATGGCTTCTTCTGCTCTGgttagctcaa ... atttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
EST: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTG CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGEST: gi|211048840|gb|FL187600.1|FL187600
genomic: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGgttagctcaa ... atttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
EST: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTG CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGEST: gi|211048843|gb|FL187603.1|FL187603
genomic: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGgttagctcaa ... atttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
EST: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTG CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGEST: gi|211051789|gb|FL187607.1|FL187607
genomic: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGgttagctcaa ... atttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
EST: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTG CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGEST: gi|211048844|gb|FL187604.1|FL187604
genomic: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGgttagctcaa ... atttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
EST: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTG CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
genomic: TAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGgttagctcaa ... atttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAG
tttggcagttattttaacttttttatttgttgctgaggctgctatatttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG
ttttaac putative branch site (score: 277)
tatttcc putative PPT
agttattttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctcaaacttccgaattctcaacttctttggcagttattttaacttttttatttgttgctgaggctgctatatttccacagCTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG