Sequence
atgc intronic sequence ATGC exonic sequencegtaagcacctcgaaacttgcctggtttcccaacgtcgttgttctcaagatttcttatgatctttaccatccgatgtcgtcgacgctgcgttgcagGTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTACCGCCGGTGAAAGGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051952_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g42800.3 (Oryza sativa), 3'ss of exon 3
gtaagcacctcgaaacttgcctggtttcccaacgtcgttgttctcaagatttcttatgatctttaccatccgatgtcgtcgacgctgcgttgcagGTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTACCGCCGGTGAAAGGGATG
|| || | || ||| | | | | | | | | ||||| | | | | | || || | | || ||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
gtgagta--tcaaaaactactctgaatttgtctgaaaatataactgaagtttctgcagctgctgaac---tgaaaccg-catcactc--ttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTGCCGCCGGTGAAGGGGATG
upper sequence: GRMZM2G051952_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g42800.2 (Oryza sativa), 3'ss of exon 3
gtaagcacctcgaaacttgcctggtttcccaacgtcgttgttctcaagatttcttatgatctttaccatccgatgtcgtcgacgctgcgttgcagGTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTACCGCCGGTGAAAGGGATG
|| | || ||| | | | | | | | | ||||| | | | | | || || | | || ||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
gtgtgagtatcaaaaactactctgaatttgtctgaaaatataactgaagtttctgcagctgctgaac---tgaaaccg-catcactc--ttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTGCCGCCGGTGAAGGGGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78114230|gb|DV532619.1|DV532619EST: TGGTTAGACGACCAGAAGAAGCTGGCCGGCGTGCCATCTGATTCCCCCGT GTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTA
genomic: TGGTTAGACGACCAGAAGAAGCTGGCCGGCGTGCCATCTGATTCCCCCGTgtaagcacct ... tgcgttgcagGTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcaagatttcttatgatctttaccatccgatgtcgtcgacgctgcgttgcagGTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTACCGCCGGTGAAAGGGATG
atttcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcacctcgaaacttgcctggtttcccaacgtcgttgttctcaagatttcttatgatctttaccatccgatgtcgtcgacgctgcgttgcagGTACCTCTCCCTCCGAATGGACGGGCGCGTCCGCGGCAGCGGCGTGGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTACCGCCGGTGAAAGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT