1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtatctttgtaaattcagttttctattgttgtttggaaattatattgcagacgtgtgattgctccaactggatgctaccttaattatatttactttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACTCTTCCTTCTTGAGAAATATGCTGGTGCAGTCTCAGTTGCAGCTGCTGG
species | Zea mays |
transcript | GRMZM2G051262_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCA GTTTCTTGCCAAEST: gi|148995029|gb|EE034347.2|EE034347
genomic: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCAgtatgtatct ... tttgttccagGTTTCTTGCCAA
EST: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCA GTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACEST: gi|74233286|gb|DT641200.1|DT641200
genomic: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCAgtatgtatct ... tttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCAC
EST: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCA GTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACEST: gi|71772097|gb|DR970034.1|DR970034
genomic: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCAgtatgtatct ... tttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCAC
EST: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCA GTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACEST: gi|91054950|gb|EB165368.1|EB165368
genomic: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCAgtatgtatct ... tttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCAC
EST: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCA GTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACEST: gi|149100385|gb|EE186457.2|EE186457
genomic: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCAgtatgtatct ... tttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCAC
EST: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCA GTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCAC
genomic: TGTTCTTGCAATGCTATGCTTATCCAGCGGTTGCTTCTTTGCTAGTACCAgtatgtatct ... tttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCAC
agacgtgtgattgctccaactggatgctaccttaattatatttactttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACTCTTCCTTCTTGAGAAATATGCTGGTGCAGTCTCAGTTGCAGCTGCTGG
ccttaat putative branch site (score: 181)
ctttgttcc putative PPT
ttaattatatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatctttgtaaattcagttttctattgttgtttggaaattatattgcagacgtgtgattgctccaactggatgctaccttaattatatttactttgttccagGTTTCTTGCCAAGTTCATTCTCCATGTATGCAGTAACACTTTCGTCTGCACTCTTCCTTCTTGAGAAATATGCTGGTGCAGTCTCAGTTGCAGCTGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT